GgaINT0124813 @ galGal3
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7591001-7591812:+
Coord C1 exon
chr17:7591001-7591147
Coord A exon
chr17:7591148-7591635
Coord C2 exon
chr17:7591636-7591812
Length
488 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCTGTGCTCATCCATTCCAGGTG
3' ss Score
11.11
Exon sequences
Seq C1 exon
GTGTCTGTGGAAAGCTCTTTCTTAATACCAGTGGGGTCATCAACATGACAGGTGTAGAGACCAGTGACTGCACTGTTGCTATTGGACGTCCTCTAGGAGAGGAGATCACAATCAATGTTCTGGAGAGCTCCCTCAACTGCAGTGCAG
Seq A exon
GTACTGCCCAGGGCTAATTGGGAACTAGCCTAGACTGTTGGGAAACCTGCACCTCATTTTCCTGCATGCTTTTCGTTCTCTGAGTGGTTCTTGCCATCTCGGATGGAGCCTGCATAATCTCTGAAACCATTTTACAAGTTTTGCAGTTTCACAGAGTCTTTGCCAGATGAGATTAACCTAAGATGATATCTTTCCTCTCCCTGCGTGATGATTTCTTATTTGTTTTGTTGGTAGATAGGGGATTAAAGGCCCTTATGGGGTTAAAGAAGTTTCCTACTTTGGCCTCTTATAAACTCTGTAACGTACCCTCTTGTTGGAATCAGTACAAATAGATTAGTTAACTGTTTCATGAAAGATTTTGATAAGATAGGAATAAGACACAGAAATTACTTGATTTCTTACCCATGTAATATAGGAGGCTGTACTGCATTCAGACCTATCTCACTTAAAGTAGAAGTGTGTCTAGTCCCTGTGCTCATCCATTCCAG
Seq C2 exon
GTGAGGTCGTGCTGTTTTCTGGACGAATGATGTGGCGGACGGGCTGCAGGAAGCTTACTTTGTCTCTGATAAATTCCAGAACAAATACATTGATTGTGAAACAGCGTGTTTTGCTGCCAGGAAATGGGGTCGTTCTTCAGTACAACAGCAGAAATGCAATCAAAAAATATTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGTGGAAAGCTCTTTCT
R:
GCATTTCTGCTGTTGTACTGAAGA
Band lengths:
304-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]