RnoINT0013312 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5555275-5555895:+
Coord C1 exon
chr3:5555275-5555421
Coord A exon
chr3:5555422-5555718
Coord C2 exon
chr3:5555719-5555895
Length
297 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CAATGCCCCGCCCTTTCTAGGGG
3' ss Score
8.25
Exon sequences
Seq C1 exon
GAGCCTGTGGAAGGCAATACCTGGAGCCCACAGGAACCATTGACATGCGAGGTCAAGGACAGCTAGACTGTGTGGTAGCCATCGGGAGACCTCTAGGTGAAGTGGTGACCCTCCAAATCCTCGAGAGCTCCCTCAAGTGCAGAGCAG
Seq A exon
GTACATCCAGAGGAGCGGGCTTGGGCTCTGGCAGCACAACCCCAGTGTGTCCCGTTCCTGTCAGGATGCCCCTGCTATGCTCCTACTCTCCATTTTTAAAAGCTGTTTAATGGCTGGAGTGTGGGGGATCTCCATTTATAAGATTGAAAACTGGGGGGCATGAGAGCTCTGGTGACATGGCCCGTACTTTGTCACGTTAGCCAGTGACGGGGAGAGTGGTCATCAGAGCTCAGCCCTGAGCAGCTGCCGCCAGCGTGGAGTGGGGGCTCTGGTTCTTCAATGCCCCGCCCTTTCTAG
Seq C2 exon
GGGAGCTGCTGCTGCTCTGGGGTAAGTTCACATGGCGGAAGATGTGCTGGAAGATGTCTGGCAGGACTTTCAGCACAAAAGCCAACACGGTGGTGGTGAGGCAGCATCGTGTGCTGCCGGGAGGTGGAGTGCTGCTACTGTACCGGAGCCAACCTGCCCCAGGGACCTTCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGGAACCATTGACAT
R:
TTTGTAGAAGGTCCCTGGGGC
Band lengths:
298-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]