HsaINT1002772 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133456069-133456719:+
Coord C1 exon
chr9:133456069-133456215
Coord A exon
chr9:133456216-133456542
Coord C2 exon
chr9:133456543-133456719
Length
327 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
ACTGCCCTGCCGCTTCCTAGGGG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GTGCCTGTGGCAGGCAGCACCTTGAGCCAACAGGAACCATTGACATGCGAGGCCCAGGGCAGGCAGACTGTGCAGTGGCCATTGGGCGGCCCCTCGGGGAGGTGGTGACCCTCCGCGTCCTTGAGAGTTCTCTCAACTGCAGTGCGG
Seq A exon
GTATGTCTAGGGCCATGCAAGCGATGCTGCCAGTTATGGGCCCTGCCAGGAGCCAGCACGACGCTGCATGCCCCATTCCTGGCAGGAGCCCATGTGCATTCCCACCTGTAGTTTGCATCCCATCTCATGACTGGGGAGTGATGATCTGCATTTTACAGATGAGGAAACTGAGGCTAGGAGAGATTAAGTGATGTGCCCAGTTACTTAGAGTCACATAGCCAGCAGTGGGAGAGGTGGGACTTGAACTCGGCTCAGTCTACCCTGGAGCCACTCCTCTGCTGACCAGGCGTGGGAGTGCTGGACCCTCACTGCCCTGCCGCTTCCTAG
Seq C2 exon
GGGACATGTTGCTGCTTTGGGGCCGGCTCACCTGGAGGAAGATGTGCAGGAAGCTGTTGGACATGACTTTCAGCTCCAAGACCAACACGCTGGTGGTGAGGCAGCGCTGCGGGCGGCCAGGAGGTGGGGTGCTGCTGCGGTATGGGAGCCAGCTTGCTCCTGAAACCTTCTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCTTGAGCCAACAGG
R:
CTCTGTAGAAGGTTTCAGGAGCA
Band lengths:
310-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains