MmuINT0011593 @ mm9
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79805654-79806471:-
Coord C1 exon
chr10:79806344-79806471
Coord A exon
chr10:79805766-79806343
Coord C2 exon
chr10:79805654-79805765
Length
578 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TCCCCCCCCCTCCCCCGCAGAGC
3' ss Score
12.68
Exon sequences
Seq C1 exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq A exon
GTGAGGACCCATTGACCCTGCCCTATCACACCCATCTCCCTGCAGACTCTACCTTAACGTATGGCCCTACTCCAAACTGTCTCAGGGCAACTACATCGGTTTTCCCACACACACCCCTAAAACCTACACTCCACCCACCCACTGTTCAGGTTCAGACCCCAAACCTCACTGGGGCTTCTCTCTGGCTTCTCCTTCAGGGCCCCGCCCATATAGCTCCAGGCTCCACCCACCCTTCCAGTCACAAGCTATTCGTGGCTTCTCTCACAGTCTTTTCGCCAGGCACAGCACACCAATTTTTCCAGTCTTTGCACACCCTATAGACCCTTCCTCCTTTCAAATCCCGCCTTAATATTCAGGCTCTGCCTACCACCAGGCCACGCCCACCAAAAAGCTTTGTCTCTAGAGTCTGCTCCAGTGCCTTGTTCTCACTAGGTCCCGCCCACGTAATTCCTTCAGTCTCGCCCACCTATCAAACCTTGTTCCTTAGTCCCGCCCCTCCCACAGCCCCGCCCTCTCATGCCCCGCTGATTCTGACCCAGTGTCCCGTCCCCCCCCCCGTCCCCCCCCCTCCCCCGCAG
Seq C2 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-Adamtsl5:NM_001113548:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(8.2=23.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCAATGTGTGTGACCTC
R:
GCTGCACGAACAGGCAAGAG
Band lengths:
222-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: