HsaINT0004371 @ hg38
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1507998-1508570:-
Coord C1 exon
chr19:1508443-1508570
Coord A exon
chr19:1508110-1508442
Coord C2 exon
chr19:1507998-1508109
Length
333 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGG
5' ss Score
5.06
3' ss Seq
GCCTGTCCTTCACCCTTTAGAGC
3' ss Score
9.71
Exon sequences
Seq C1 exon
CGCCCAACCAGTGCGACCTCAACTGCCTGGCTGAGGGGCACGCCTTCTACCACAGCTTCGGCCGCGTCCTGGACGGCACCGCCTGCAGCCCGGGTGCCCAGGGGGTCTGCGTGGCTGGCCGCTGCCTT
Seq A exon
GTAAGGACTCGTCAGGCCCCGCCCGAGCCCCGCCCACCTCCCACTCAGGCCCCACCCATCCTAGGCTCCACCTCCGCCCTCCTCCCATTAGCCTCCACCCCCTCCCTAGGCTCCACCGCCTTCCCCCTCCCCTTCCAGGCCCTGCCCCCAGCCCCCCTTAGGCACCCACTCCCGGGCGCCAAGCCCATCCTCCTCCCGCCAGGTCCTGCTCCTCCCTAGGCTCCACCCCCATCTTCCCTCCAGGCCTCGTCCTCTTGCTCCCAGGCACTGCCCTTTCCCCAGGTCCTGCCCCTCCCAGCGTCAGTGACGCCGCGCCTGTCCTTCACCCTTTAG
Seq C2 exon
AGCGCCGGCTGTGATGGGTTGTTGGGCTCGGGTGCCCTCGAGGACCGCTGTGGCCGCTGCGGAGGCGCCAACGACTCGTGCCTTTTCGTGCAGCGCGTGTTTCGTGACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761:ENST00000330475:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(8.2=23.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGTGCGACCTCAACTG
R:
CGTCACGAAACACGCGCT
Band lengths:
233-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development