MmuINT1003825 @ mm10
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80342739-80343726:-
Coord C1 exon
chr10:80343599-80343726
Coord A exon
chr10:80343021-80343598
Coord C2 exon
chr10:80342739-80343020
Length
578 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TCCCCCCCCCTCCCCCGCAGAGC
3' ss Score
12.68
Exon sequences
Seq C1 exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq A exon
GTGAGGACCCATTGACCCTGCCCTATCACACCCATCTCCCTGCAGACTCTACCTTAACGTATGGCCCTACTCCAAACTGTCTCAGGGCAACTACATCGGTTTTCCCACACACACCCCTAAAACCTACACTCCACCCACCCACTGTTCAGGTTCAGACCCCAAACCTCACTGGGGCTTCTCTCTGGCTTCTCCTTCAGGGCCCCGCCCATATAGCTCCAGGCTCCACCCACCCTTCCAGTCACAAGCTATTCGTGGCTTCTCTCACAGTCTTTTCGCCAGGCACAGCACACCAATTTTTCCAGTCTTTGCACACCCTATAGACCCTTCCTCCTTTCAAATCCCGCCTTAATATTCAGGCTCTGCCTACCACCAGGCCACGCCCACCAAAAAGCTTTGTCTCTAGAGTCTGCTCCAGTGCCTTGTTCTCACTAGGTCCCGCCCACGTAATTCCTTCAGTCTCGCCCACCTATCAAACCTTGTTCCTTAGTCCCGCCCCTCCCACAGCCCCGCCCTCTCATGCCCCGCTGATTCTGACCCAGTGTCCCGTCCCCCCCCCCGTCCCCCCCCCTCCCCCGCAG
Seq C2 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGACTGTCCCATTCTGACTCACCACCAGCGCTTGAGAAACACAGTGGAGAGGGGTGTCCCTTTAACAAGTTTGGCTCCTGGGAGCCAAGGCTCTTGTTGATTGGGCTTCCCCTGATTGGCCTCTGACAGAGCGTCCCACCCTCCCTCGAATAGATGCGCTTTTAACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822:ENSMUST00000105352:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTTCTACCACAGCTTTG
R:
CTATTCGAGGGAGGGTGGGAC
Band lengths:
355-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types