BtaINT0009048 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45563503-45564058:-
Coord C1 exon
chr7:45563931-45564058
Coord A exon
chr7:45563620-45563930
Coord C2 exon
chr7:45563503-45563619
Length
311 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGG
5' ss Score
3.38
3' ss Seq
TGTCCACCCCACCCCTTTAGAGT
3' ss Score
7.85
Exon sequences
Seq C1 exon
CACCCAACCACTGCGACCTCAACTGCCTAGCGGTGGGGCACGACTTCTATCACAGCTTCGGTCGCGTACTGGACGGTACCCCCTGCAGTCCGGGCGCCCAAGATCTCTGTGTGGCTGGCCGCTGCCTT
Seq A exon
GTGAGGATTCCAGGCCCCGCCCCGCCCCCTAAACTCCACCCCGCCTCTTCCCTCCATACCTCGCCCCCAAACCCCATTTATTTAGTTCCTGGTCCTGCTCTCTTCCCTAGGCCCCGCCCCTTATCAAGTCCACGCCCTCCCCTGTCCCATCTATCACTAGACTCCATCCCCAGCCTCCTCCCACGAGGACCTGCCCCCAAGGTTGCATCCTTTTAGGTCTTGATTCGGCCCTCTTCCAGGGTCCCGCCCCTTCGTTGGCCTAGGCGGGCGGGGACCGTCTGACGGCGCGCGTGTCCACCCCACCCCTTTAG
Seq C2 exon
AGTGCCGGCTGTGACGGTTTGCTGGGCTCCGACGCCCGCGAAGACCGCTGCGGCCGCTGCGGCGGCGCCAACGACTCGTGCCTCTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263:ENSBTAT00000065686:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAACCACTGCGACC
R:
GCTGCACGAAGAGGCACG
Band lengths:
222-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]