RnoINT0013690 @ rn6
Intron Retention
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12233596-12234576:+
Coord C1 exon
chr7:12233596-12233723
Coord A exon
chr7:12233724-12234269
Coord C2 exon
chr7:12234270-12234576
Length
546 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CCCAACCTCCAACCCCACAGAGC
3' ss Score
6.4
Exon sequences
Seq C1 exon
CGCCCAATCTGTGTGACCTCAACTGCCTGGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGGACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq A exon
GTGAGGACCCATTGATCCTGCCCCACCACGCCCATTTCCTTGCAGACTCCGCCTTAACGCACGGCCCCACTCCAAACTGTCTCAGGACAGTTACATCAGTTTCCACCCTCCTCCCCAGCCCCCCGTCCCTAAAAACTACACTCCACCCACCCACCGTTCAGGTTCAGACCCCAAACCACACTGGGGCTTCTCTCTGACTCCTCCTTCAGGGCCCCGCCCACATGGCTCCAGGCTCCACCCACCTTCCAGTCACAAGTTATTCGTGGCTTCTCTCAGTCTTTTCTCCAGGCCCAGCACACCAATTTTTCCAGTCTTGCACACCCTCTCGCCCCTTCCTCCCTTCAAATCCCTCCTTAATATTCACGCCCTGCCTACCGCCAGGCCACGCCCACCATCGTGCCCTGTCGCTAGACTCCGCTCAAGTGCCTTGTTCTCACTAGGTCCCTCCAGTCCCGCCCACCTACCAAACCTTGCTTCTCAGCCCCGCCCCCTCCCACAGCCCCGCCCGTCCTGACCCAGTTTCCCCCCCAACCTCCAACCCCACAG
Seq C2 exon
AGCGCAGGCTGTGACGGACTACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGTGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCGGTGACTGCCCCATCCCGCCTCACGGCCTGCACTTGAGGAGCATGGTGGACAGGGGTCCCTTTAACGAGTTTGGCTCCTGGGAGCCAAGACTCTTGCTGATTGGACAGGTTAAGGCCCGGCTCCTCGAGGCCTTCCCCTGATTGGCCTCTGACAGAGCGTCCCACCCTCCCTCGAATAGATGCGCTTTTAACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787:ENSRNOT00000060811:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGACCTCAACTGCCTG
R:
CGGGCCTTAACCTGTCCAATC
Band lengths:
350-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]