BtaEX0001456 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45563022-45565499:-
Coord C1 exon
chr7:45565391-45565499
Coord A exon
chr7:45563508-45563619
Coord C2 exon
chr7:45563022-45563177
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTCCACCCCACCCCTTTAGAGT
3' ss Score
7.85
5' ss Seq
CCGGTGACC
5' ss Score
3.33
Exon sequences
Seq C1 exon
GACTGTCCTCCAGGGGCCATGCCCTTTCGAGACCTCCAATGTGCCCTCTACAATGGCCACCCTGTCCTAGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCTATGGTG
Seq A exon
AGTGCCGGCTGTGACGGTTTGCTGGGCTCCGACGCCCGCGAAGACCGCTGCGGCCGCTGCGGCGGCGCCAACGACTCGTGCCTCTTCGTGCAGCGCGTGTTCCGCGACGCCG
Seq C2 exon
GTGCCTTCGCTGGGTACTGGAACGTGACCCTGATCCCCGAGGGCGCCAGACACATCCGCGCCGCCCACCGGAGCCGGAACCACCTGGGTATCGCAGGGTCCGAGGGAGGAGGCGCCCCGCTGGCCGCCCGAATCCCCCGGGGAGGGAGATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTCGAGACCTCCAATG
R:
CCTGCCATCTCCCTCCCC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development