MmuEX0003909 @ mm9
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79805052-79806471:-
Coord C1 exon
chr10:79806344-79806471
Coord A exon
chr10:79805654-79805765
Coord C2 exon
chr10:79805052-79805138
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCCTCCCCCGCAGAGC
3' ss Score
12.68
5' ss Seq
CCGGTGACT
5' ss Score
4.54
Exon sequences
Seq C1 exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
Seq A exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCG
Seq C2 exon
GTGCCTTCGCCGGCTTCTGGAATGTGACTTTGATCCCCGAGGGCGCCAGGCACATCCGCGTAGCACAGCGCAGCCACAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'8-17,'8-14,10-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(8.2=23.7)
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAATGTGTGTGACCTCAA
R:
CCAGGTGGTTGTGGCTGC
Band lengths:
214-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: