DreEX6046041 @ danRer10
Exon Skipping
Gene
ENSDARG00000042186 | paplnb
Description
papilin b, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-6023]
Coordinates
chr20:33602729-33606206:-
Coord C1 exon
chr20:33606109-33606206
Coord A exon
chr20:33604425-33604626
Coord C2 exon
chr20:33602729-33602905
Length
202 bp
Sequences
Splice sites
3' ss Seq
CAATATGACTCTGTTTGTAGATA
3' ss Score
6.07
5' ss Seq
GATGTATGG
5' ss Score
3.5
Exon sequences
Seq C1 exon
GCGGTGAGCCATGGAGAGATTGTGGGCTTTGAGGATCGTGATATTCCTGTCACTTCTAGACATGGACCTGGTGCTGCTGTCCATCTGGACACTTACAG
Seq A exon
ATACACATACAGTGCCTACTCTGAGTGTTCCCGTTTATGTGGAGGAGGTGTTCAGAGCCGCACTGTTTACTGTGTTCATGAGAGAACATCGGCAATGGTTGATGAGTCCCATTGCATTGCAAAGGGCCTCAGAAAACCAACTGCACAGGTTGCCTGCAATGAACACGCCTGTGCCGAATACAGCGCCGGCCCATTTGGTGAT
Seq C2 exon
TGTTCAGTGACCTGTGGTGAAGGGCTGCAGACACGAGAGGTGATCTGTGTCGGGGCCAGAGGAGAGCGACTCTCTGAGCACCACTGCAGTGGACTCACGCGACCACAGGCCACCAAAGCCTGCAAGAGACCGGCCTGCCATCAGGTCTTCAGATACTACACCAACGACTTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042186-'6-9,'6-6,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=82.4),PF0009014=TSP_1=PU(11.3=8.8)
C2:
PF0009014=TSP_1=PD(84.9=76.3),PF0009014=TSP_1=PU(11.3=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAGCCATGGAGAGATTG
R:
GGCTGAAGTCGTTGGTGTAGT
Band lengths:
272-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]