HsaEX0002611 @ hg19
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1507556-1510257:-
Coord C1 exon
chr19:1510149-1510257
Coord A exon
chr19:1507997-1508108
Coord C2 exon
chr19:1507556-1507642
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCCTTCACCCTTTAGAGC
3' ss Score
9.71
5' ss Seq
CCGGTGACT
5' ss Score
4.54
Exon sequences
Seq C1 exon
GACTGCCCCCCAGGGGCTGTGCCCTTCCGAGACCTACAGTGTGCCCTGTACAATGGCCGCCCTGTCCTGGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCCATGGGG
Seq A exon
AGCGCCGGCTGTGATGGGTTGTTGGGCTCGGGTGCCCTCGAGGACCGCTGTGGCCGCTGCGGAGGCGCCAACGACTCGTGCCTTTTCGTGCAGCGCGTGTTTCGTGACGCCG
Seq C2 exon
GTGCCTTCGCTGGGTACTGGAACGTGACCCTGATCCCCGAGGGCGCCAGACACATCCGCGTGGAACACAGGAGCCGCAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761_MULTIEX1-3/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(2.1=2.7)
A:
PF059869=ADAM_spacer1=PU(8.2=23.7)
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCCTTCCGAGACCTA
R:
AGGTGGTTGCGGCTCCTG
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)