DreEX0000174 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50210606-50228070:-
Coord C1 exon
chr7:50227943-50228070
Coord A exon
chr7:50213431-50213554
Coord C2 exon
chr7:50210606-50210689
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTGTGTGTGCAGAAG
3' ss Score
7.72
5' ss Seq
ACGGTCAGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GCTCTGACCCGTGTGAGCTCAGCTGTCTGGCTATTGGACACAACTTCTACTACAACTTTGGAAGGGTGCTTGATGGGACACCATGCCAATCAGATCAGGGGACAGTCTGTGTGAATGGGAAGTGTCTG
Seq A exon
AAGCCAGGATGTGACTTGATCTTTGGATCGCAGCAGCAGGAGGACGCCTGCATGGTGTGTGGAGGCCACAACTCAACCTGCCTTCATCACAGAAGCGTTTATCAAAGCAACGGCCAGAACAACG
Seq C2 exon
GACTGTTTGGATACAGTGAGGTCACCATGATCCCGGCCGGAGCCACACACATCAGAGTGACTGATAACAGCAGAAACTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'6-8,'6-6,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(9.1=23.8)
C2:
PF059869=ADAM_spacer1=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACCCGTGTGAGCTCAG
R:
TAGATAGTTTCTGCTGTTATCAGTCA
Band lengths:
210-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]