MmuINT0015124 @ mm9
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69388280-69390566:+
Coord C1 exon
chr10:69388280-69388939
Coord A exon
chr10:69388940-69390442
Coord C2 exon
chr10:69390443-69390566
Length
1503 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
GGCTTGTTCTCCACCTGCAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
ACTCCTGCTCCCGGGCCCTTCTTTGTTTTCTCCCTGGGTTTGTTTTTCTTCTACCTGGCTTGGCTGTTTCTTCATTCACTTTTGAGAAGAGCCCGTCTCCAAATCGCCCAGTTACACAAGTGCCCGGGGCTCTCTGGACTTGTGAGGGTCCCTGCTACTCTGACTGCCCTGGTATCAAGTTACTGAAAGTCTACACCCAGGCAGTCCTCATATTTACATACAAATAACTCCTGGGTTTGCTTTTATGTCACTATTGGGTCCTGCAAGAGGCTTGCCAGAGCGTCCTTAATCCAATCAGGAGGCACTTTGAAAGGATGTCTGTTGAGCGGTCAGAAGGATGTTCGTCGCTATTAAGTGTTGCCACACAAAATTTTTCGCATGTTTCGGTCTGAGTTTTTTTTTTTTTTTAAATCTTCGGAGTTAAAAAAGTGAGGAATGATGTACAGCTGCTCAGTTGCCTTCGACAGCTTGGAGATGCTGAGGGAAACGCTGCAGCCCTGGTGAAGAAGATCTGACTAGGGACGGGTTTGGATCCATACCAGGCTGGTGTGGATTGGGGCTGGTGTGGACGGCTTACTCTAAACCCCTGCTTAAGGAATTCCTGGAAGCCTCGGGAAAGTACTCCCCAACCAGTCGTGGTGGAAATGGCTTTGCCACACA
Seq A exon
GTAAGATCTTTCTTTAATTCCTGCTTGGAGGGCTCTGGTTTGGTTTCTGATGGAGAAATATGCAAATACCCCTCCCCTTGGAATACTTGACCTAGTGTGAAACAGAGTAACATCCGGAAGATGATCTGTTTACTGTTTTACATTTGGAAAAAAAAAAAAAAAGAAGAAGAAGAAAGAAAGAAAGTAGTTACCAGTGTGTTTCAAGACCTGATTGGTTGCTAAAAAGTTGAGCTCCTGTGGTTTCGAGAGAGTTGAAATGAATGGGAATTGTAAACAGCAGTGAATGGAGAAGCGAGCCATGAATCATTTGCCTCTGAGAGAACCTAGCATATACACATTTGGAACCTCTTTGGGCCAGCCAGCTTGTATCTAGAAAGGGAAGGAAAGGAATTTTAAAGAGAGACCGGGTTTGCTCGAGTGGAGGGAACTTTTGTTGCGCCGCCTGTGCTATACTTTGAGAGGGATGGGAACTATCCCAGAGGGCAAAAGACGATTGAAAAACCTGCCCCGTTGCTCTTGGAATGTGGTTTTCCGTGTGAGCTCACTAGGCACACAGAGAGCTTGGAAGAGCATTTTGCATGCATTAACTCTTTGTGTGGATAGTTGGAGCACAGTTCCTCTGGTTCCCCCCTTCTGGCTGCAGGAGCCCCTAGGTCAGGGCTAGTCTTTTAGAAGGCAGAATTAGTTACTTTGCAAGTAGACCTCAAGCAAGCGGTGGGAACAGCTGAGCTGACTCGTTAATCTGAGAGATTTAGAAACGGTTCAAAGTTAGTGTGCTCCGAGGTCTCCCAGGCAGGCGGGTCCTGCTCCCACCAGTAACTCCCGAAACTCGGAATAGATATGCCCCAGCCTGAAATCCTAAGAGGAAACTGGTTTAAAAAAACACCGCCAATCTCTTTCCTAGGCAGGTGAGATAGCTCAGTTGGTTTAAAAGCACTTGCTCAGCCTGACTCAGTTTGACCCTGAAACCCACGTAATGGAAGGCAAGAACTGACTCGAACGGTTGTCCTCTGACCTCCACAGGTGCCCTTTGGCACGTGCACACTAACACACACAAGCCAATAACTAAATAAAGCCGTTCCCTTCCCTCACTTTAAGGACAGTATTGGTGACATATTAGGCCTCATTGTGCAGGCTGTGTCCATTCAAACAAGATGCCATCATCATCATGGGTGGTAAAGTGGGGGGGGGGGGGCGTGACTCACCTGATAGATAAGCTTCATCGCTTAATGCACTGAACCTGGGAGGCAGGGAGTGGGTAGGGGTCATGCTTACATCGATCATCAACACTAATTGAGCTTGCTTCTTTGGTCAGCCCCTGCAATGGGGAACTAACCTCTCCCTCCACTGTTTCTTTCTTCTGTATGGCAGTTAAAAAAATAAAATAAAATAAAACCTACAGGGGTGCCTGGGAAGGAGATTACACCATGAGAGTCTCTTTTCTCCCTGATGGCCACATAGTCAAGAGGGAGGGCTTCTGACTGGCTTGTTCTCCACCTGCAG
Seq C2 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-Ank3:NM_009670:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAGAAGGATGTTCGTCG
R:
CCCCTGTGATGGCATCTTCAC
Band lengths:
355-1858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: