GgaINT0041360 @ galGal3
Intron Retention
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10099485-10106006:+
Coord C1 exon
chr6:10099485-10099547
Coord A exon
chr6:10099548-10105882
Coord C2 exon
chr6:10105883-10106006
Length
6335 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CTTGGCTTTTCTTCTGGCAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
TTCGTAAAGCCAATGCCCCTGAAATACTCAGTGATGCTGAATATTTGTCAGATGTTGAAGAAG
Seq A exon
GTATTTGTACATTTTTGTGTTGCAGTGATATTTAACTTAAGCCTCTTCCTTTTACTGTGCCTTACTGGAAATTAATCCTTTCAGATAATCTTCTTATCCTACTAACAATAACTTCTGCTTTACAGTTAAGAACGCTTTCAAAAACTCCTTGAGCTGTTAATGATAATTCTCTAATTTTTTTCCTGAACGCCTTACTACTAATTTCTAAATGAAATTACCTCCACTTTTCCTAGAATAGTCCTTTTGCCGCTGCTTCTATAAAGTGGAGAATTGGTTTACCATTGCAACTGGAAAATATCAGACAAAAGGGTCAAATATCAAAATACTTAAAAAGAAATAGCTGATAGTGAAAGTGAAGGACAAAAGGATGGGTGGGTTTTTTGTTTTTTAAATTCTTCTGTGTGTTCAGCTATGGAATGATCGATTTACACTGATTGCCAACCCTTAGCCTGGAAAGAAGTATTTTTAGGATTTAAAACAAAACTGTATTTTAATCATGATCTTCAGTAAAACCACGTTGGATTACTTCTGTCCTAAGTAAAGGGGATGCTGCGCTGATCTCAGCACGTTGTGTTTCTTGGGATTAAGGATGTGCTCTTGTAGCTGGGATTTCTGTATTCTGTATCATTCTTCAAGGTGATGTGCAGTCTGTGAGTGGGGCAGTAAGCCATGTCTTCTCCGTGTCTCTGGATTAGATTTATCAGCTATTGACACCAGCAGCTTGCCCATCACAGCTCACTCCTTGGTGTCTGGCTGGGCTGACACAGTTTCAGTGGTCTGTTAAGTATCTAAAACCCATTTGGTAACTGCTTCCCTCGCAACCACCGTCCCCTGCTAGGTCAGACCTTGTGTGGTGTGGACGTGCAGGAGCCTGTGTGAGTCCCACCAGGAACTGCAGGTTTCCAGAGATCACAGTGGGATTGGATTCCCACATCACGCTCAGAAACAGGAAGGTCTTGTGTTGAGGAAGGGAATGATGGCAGTGCCCTGGTGGCTTTTATGCGCGTCCCTGGTCACTTGCACTAGAGCTGCAGATTTTCCTTTTCTAGTGGGGAGAGAAGTGACTGGGTCCAGTTAGCTTGTGGCTGTGTAGTCAGCCTCCTTCTTTGTGCCGAGCGATGTTTACGTGTTTATAGCACTTAAGCAGTATGGTGTAAAAGCTGTTAGAGAAGCTCATTGTGTGCAGCTCTTGTTTAATTCATTCACTGAAGCTTTTGTTTTGTTTTCAGTTTGTCAGTGTTCCTATATTTGCATTCTCAAATAGATCATGTTCTTACCGTGCACCTGTGTTTTCCAAGTAACTTTTTTGGGCTATTGTACTGCTCAAAATACTGCATTGTTGTAACTGGCTGGAATGCAGATGCCTAATAGAGTTAGTTAATAGAGCAGCAACAGCTGCCTTAGCCCATGGCACAGCATGAGGTTTGCTGCAGATGAGAAACGCCTGTGTAGGGTCAGAATATTAGATCCAAGATGTTAAATGTGTCCTTAATGTATGGAATCACTTCTTATGGGCAAATGCAAAGCTGAAGGGAAGTGAGAGACCCGTTGGAGGTTTTTATAGTCACAAACTCTCACTTTGGGGAAAAACAAATAAATACTAAGGATACGGGTAATATAATCAATTTCTTACCTAAAGAGTGTATTCTGCCACCATGCTGTTATTAGGGGAGCTAAGAAGCTGGCTTACACGTAACAAGGTTGTTTTCAAAGCCTATTGCTCAACTGGAGCTTTCAAATCAGATAATAGGTATTTTATTAATCCACGCTAGAGCACTGCAGCACGCAAAGAAGGTGGGGAATTACAGGCTTTGAGGCAGTAACCACTGTCCTGTCTCTTTCTTCTGCCTTGTGCATCCCAGAAGACAGGATATTGATGCCCTTTCCTGCAACTGCTGGGTGCTGACAGAGTGTTCCATGTACAAAGCGCTTCAGGGTGGTAACAAATCTCATAGCCAGGGAATAGGTTTCCAGATGAGAGATGGACGCAAATGTATGTCCCAAACCTCAGCTCTCCCTCACTTAACATTCAGGTCAGCCGAACTATTTAGTGCAAAATTTGCCCCATGATCTCTCAGCATGCAGAAAACCTCAAGGTTTATCTCCTAAGACCAATTGAAGGCTTGAAACTGAAAGTACTCTCAGAGCTCAGAGACAAGTGTGTCAGGGAACTGCTTCCTTCTATTTGCTGCTTGCTGTGTCTACTAAACAAGTACTCAAAAACGGTGTCATTTCCCTGCAGTGGAGAGTTTGGTTTGCAGTTGGCCCAAATGAGAGGGGACTCATTTTCCTGTACTGCTCTGGAAAGTATGGCCAAATGAGGTTACGTGCTGGGAAACCGCTTTACTACAAAAGAGAAATGGCCAAAATAAAAACCCAGCAATAGTTTAAGTGTTGAAAATTTAGAAGGCACACGGAGTGCTGAGCTTTCATTTTTTTTTAATTTTTATTCGGTCTTCAGTAGGTAACTCTTTTTTGGTGTAAATAAGGACACTGTTTTAAACCCATTTAATGGATATTCCGCTCTCCGTAGGACTAAGTATCGTGCTAATCGATCTCTGGCAGATTAGGCAGGTGCCCGAGGAGGAAGTGAGAGCACACAGCCTGATCCGTGAGCAGGTGCTGGGTTACAGAAATGAGTGCCTTGAAGACAGGTCAGGACATTCTCAGGAATTAAAGTCTGTCAGAGCGACACAGGAGGGATGAATTTATTCCATTTTTACACTCGAGTTTTCTGAGACTGCCTCGATACACTTTTCACAGATCAGCAAAAGTTTCAGTGGTTTGATCCTGGCTTTTCTTCAAAACCGTGGCTACAACCAGAAGCATCCTGCTCTGCCCCGGGGCTCTACCTCTTCTGCCACCACACAACTCTGGACAGGCGGTGACGAGGGAGTGGCAAAAGCAAAGCCCATGACAAATGTCTGTTTGGATCCCAAGCTATGATTAAACGTGGCTTGGGACAAGCCACATGATCCCTTCGCTGCTGCTGCCAGAGAGCCATGTTTGTCCCTGGCCTCTAAAAAGAGCTCTGGCGCTGTGGTTTTGCAGTTCTCAGCTATATGAGACGGGCTCTGAGGAATCAGAAAAATGGGGAAAGCCTGGGAATAGATGGCAAAGGTGATCAGAGATACGGAAAAGCTTCTAGGGAAGAAGGGAGTAAAGAGAGTAAGATTATCTATCAGAGAAGAAAATCTCGAGGGATGAGATAGAACATGTGAGGTAGTGGGTGGCAAAGGGAGTGGTGAGTGGGCTGCTTTCTGTGTTCCCTGAAGTCCACAAACAGGATGCACAGGTGAGACCAGCGAGGTGTAGGTTCAGCCTAAGTAAAAGGGACTACTCTTAGTGCAAGAGCTGCTTGCAGCACGAGACCCCCTGCACACGTCCTTGCTTTGGGGAATGCAAGAAGTCTATGCAAGTTCAAAGTGTAAATGGAATGATTAAAAAAAAAAAGCCTTTTGTGACGATACCAACGTCTCTCAAAAAAATCTGTGTTCACACTACCTGCTGGCTTGAGAAGTGTCCTGGAGGACTTCCACCCTGTCATCTTCTTCACTTCTGTGAAGTTTGCCTGCCGTCAGAGCAGGATGGTCTTGGACAGATTGACCTTTGCTTTGACCTGTGGCTGCCATTTGTCCGTGGTTTTGAATGGATTCCTAGACTGCCCATGGCTGTTTGCCTGCTGTTTACAGGAGCACCTTGCTTCAGCACAGCAGATGGAAGAGGAAAGCACAAGGGAAGGACAGCAACTGTAATAAAGCAATGCAATATTCTCTTTTTTTTTCCCCTTGTTTTTATTAATGCCTCACTTCTTGGGCATTTCTAAATAGCGTTCGTGTCCCACTTTGTCTGTGGGACATCTGTGCGGTACAGCGTGCCGCAGCGCTCCATGCTCGCTTCCCAAAAGGAGGAGGATGAGGCTGCGGCACCCAACTCAGCAGAGCGGGACTGCTGAACCGTGCACCACCCATTCCGCTGGAGCCTCCCACGATCACCCCACAACGCGTGGAATCCTTTGAAAGAACCACTCCTAGCTGCAGCTTTTCCTTTGATGAGCGCTTCATCAGAGCCATCCAGCTGGCTGCAGAGCTGCCTAACACCTCACGCCTTCTGCAGCCCAACCGGCAGACTCGTTCTATCGCTCCCCACTTTGCCTTCGACAACCGACGCTCCCAAAAAGTGCTTCGTGTCAACGGCACGGCTTTCGTCTCTACACGTAGAAAGGGCGGGAGCTTCCAAATGCTACCGCTCTGTCTATTACCGCTTAGAGCCGCCTCCGGTCCTCTCTCGGCCCGGCCCCGGAGGCTCTCCGTGCGGCAGCGCTCACCTGGCGGCCGCTCCCCGAGCACATGTGGAGCGGTGCGGCCCGGCCCCGGGCGCGGGAGGCGGCCCCGGGAGGGCGGGCGGAGCGCTGCGCCCTTCCCCACCGCCCCGCGCTCCCGCTCGGCCCCGGTATCGAATTACAGCAAAACTACACCCTCGCAGCACCCCGATTTACATACAAATAGCTCGAGTGCCTGCATTTATGTCACCAGTCAAGGGGCTTGCCAAGGGGAGGCTGTAATCCAATCAGCAGAAGCTTTAAAGGGATGTCTGCAGAGTGATTAAAAAGGGATTTTTTTATTTTTTTATTTTTTAACTGTAGTCATTACTTTTCGTTTTGTTTCATGTTTGAAAGAAGTTTGATCCGAATCGAGAGGACAAAGATGCACATGTCCTAAAATACGTACGAAGAGATCAGGATGTTAAGAAGATCTCGGTTGTTGTGTGGAAAGCGAATATGACCCCCAGGGATTAGTTTGCTGGTGCTGGTTTGGAGATTAACTCTAAATCACTGCTTAAGGACTAATAGGACTAATAGGAATTCTTGGAAACACCAGGGAAAAACCTTATAGACCAGGCTGGTGGAAATGGCTTTCCAAAACAGTAAGACCTTTTTAAAGTTTAACTTAATCTATAATGTTCGTGTTTGTGTTTTGGGTGGGTTTTTCTTTCCTCATGTTTCGCGGTTCGCGACGACTACTTTAGCTTTAAAACCGTTGCTTAAAATAAGCGTTGTTGTCGGGTTGGAGGAGAAAGTAGCTGTGTTTGTTTGCCGTTCGCGGAGCAGTGGCCGAAGGGGTATTTTTAGACCCGATTGTCGGTTTGAAGCAGCGCTCGCGGTGGTTTCCTGAGCGAAGTGAATGGAAAGTCGCGTAGCGCCGTGAATGGGACTGGGGACGGATTGGGCGCCCGGAGCCCGAGCTTTGGAACCCGCTGCGAAAGTTCTCTGCTGGGCAATTGTACGCGCCTGAGACGCATTCACAACAAAGGGAGGGTGCAAGCGTAGGCAAATAACGAGCTGCAGGAAGCTCTCTGCTCCGTGTTCTAAAGGGAACGGGGAAAACCTCTTTCCACCGCAGAAGGCATATTTTGGACTTGCTGTGTCAATGCAAGAATGTAGTTTTTGCATGATGTAATGGTATGCAAATGCGCCCAGGGAGAGGGAGCTGCTCCATTAACCCTTTGCGGCATCCGCCCTCCTCCCCCAAGACATAGCTTTCCTTACCTCTGTTTTTCTAAAACACGAATCTGCTTCTCAGCTGACGCCCCGCACCCCGGTGTCTGGCCGTTGGAGCTCGGCTGGCGGCGGTGCTTGTGTGAACGTGGGCTGCCTGATAGCTGGCGTGCTGGGAGGGCCTGCTGGGTTAAGGCTTTGTTCTGCTCCCACGGATGGACGTCTTGCTGTGCCAGGCAGAGATTGGGTGCAGAGCTCGTCTCACCTGGGCAACGTGAGCCAGGGCCTGGGGAGCACTTCGTTAAAAAAAATAGAAGTTTCCTCTTGCATTCAAACTTGGAAAAGTTACTGAGAAATACCAAGGGCGGAGGGTAGGCCTCTTCAGTTGCTCAGCATCCGTTCACATTCCTGCACAGTTCAGTACTGACGGGCAAGCGGGCAACTCTTCACAGCTGGTTTCTTACGTTGTCCAGAGACCCAACTTTGTCAGCTCGGGCCTTTTGGTAAGGAAAGCAGAAGTGAGTGGAATGGTTCAAAGTACGGAAGATCCCTTTAGCTGGCTTAAACAATTGGGCAAAAGTCATCCCTTGTATAACTTCATTGGATTTATGTCAACGCGCAGATTTGCCTCTTACTTTTGCCCCCAATAAAATTATTTTCTCAGGCCCATTCAGAGGGCGGATAATTGACAGTCTGCACAGAAGGAGCCTTAGGGAAAGTGGGCTTGATGGGATTGCTTACTTCCTGGCAAGCACAGGAGGGTGTTATAAATTAGTAAGCGCACAAACATTTATGAGACAAGCAGCTGCTGATTTCAGCTTGGCTTTTCTTCTGGCAG
Seq C2 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000004956:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.223 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]