MmuINT1004269 @ mm10
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69920438-69927818:+
Coord C1 exon
chr10:69920438-69920491
Coord A exon
chr10:69920492-69927694
Coord C2 exon
chr10:69927695-69927818
Length
7203 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GGCTTGTTCTCCACCTGCAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GTGATAAATGCACATGGTTCAAAATTCCCAAAGTACAGGAGGTTTTGGTGAAAA
Seq A exon
GTAAGTCCCCCCACCCCCACACTCTGGAACTGTAGCTCACCTCTTCAGAGGCTGTACCTGATCTGTCAATCATTCCAAATATTTATTGAGCACCCACACTGTGCTGGCCAGTGTTCTGGGGATCACACAGGGAACAAGGCAGACATCTATGGCCTTCTGAGAGCTTTGCTCATCCCCGCTATCAGCAGGACTCGCTCAGTGGACTTTGAGGAGGAGTCAGAACAAGAGCCTCAGCGCCTAATCTCCTGCCTCTGATATCCCATCTTTCTCAAATGCTCAGTGGCCTTGGATAACTTGCCTCCCTTGTTGCAAAGTGCTCTCCTAGGTCCTGACGCAGAGATAGTAGGTGGAGAGAATTAAATGAGATACTATAGAGAGCACGCAACACACAGTAAATGCTCAATAAATAGAAGCATTGATTCGAGTGATCCGATCGCACCCTCTGTCCTGCCATGAAGACTGATAATGGTTGAAAAGCTCACTGTTTATCACTGTTCATTGTCTCTCTTTGCTGTGATCAAAAACCCACCTTTTAAAGCTCAGCTGATGCTGTCTACGGTTGACTGCTAAGTGCTGTCTCTACAGAGCAGTCAGCTCCTGGTTAATCAGTGGGCTGTGCAAATTACACCCTTCTTGGTTTCTCATCTGTCTGCTCTCGATCTCGTCATCTGGAGGCTTGGGGGCTATTGTTTACTTGGAGGGGCTTTGTGTGTGCTATTTCACCTTTTAATGTTACAGAACGCAGTCTCTTGGTGGAGGTGGTGATGGTTGGGGGCGGGATGGATTCTGCATTCCGCAAGACCAGAATTAAGCCTTTCTGAGTAAAATATCTAACTATAGTTTGGCTTAGCTATTTTGAGCAAGTTCCTCCCTGACTTAGGTCTCTGAGCCGATAAAGAAAGGACTTCAAGTCCCTAGAAAAGCAACAAATGGGTTTTGTGGTGGTGAGCTCGAGGTGGAAAAAGTTACAAGAAAGTTACACATGGGGGGAAGGGGGCGGGGGAGTCAGCAGGGAAGGAGAGGAGGGAGAGAAAGGAAAGAGAAGAGGGGAGAGGGTGAGAAAGGGGACAAGGGAAGAAGGGAGGAAAGAAAAGAGAGGAGGGGGCAAAGGGTCCAAGCCTAGGGCTAGAAAATTCGTTCCCACATTAGGTCAAGAGCTGTTTTGTTGAGCCACATAGGAAGGATCGCTGAGAGCATGGTAAAGGTAGGATGCAGGATGGCTTCATATGATCCAAGGAGATAGTGCACCCGTCCGTTCCTCCACAGCCCTGAATATCATTTAGCTCAGTTTCTTTTTATTTCTGTCCTTGTACCTGAGGCTGTTCTAGCTTGTTTTCCAGGTAGACAGAGTTTACAACTCTTAAGTGCAGTCCTTTCAGGTAAAGGGAGTCTTCTCTCCATTCAGAGACGGGGAGGGGGGGATGGCTGGGCATGGTAGTGAAATGCAGCCAGTGGTATGGTCACTTGAGGGATGGTGGTTCTTCTGAGGTTCCTGTTGAATTCAGTTCACGGTGTATTGAAAACATTCCCCACGTGGTGGAATACTGACATAGATGGATTAGTAGTAAGATGAGTGGTGCCCAGATATCAATGCTTAGAAAGGCAGTAGTGCATGATGGGAGCTCACCTGATAGAATCTGCCACCCCACTTGCTTGAGGTCCTTGTCTGTACTCATCCTGCGGTCACAGCTGAGGTACAGAGCTGAGGAGAGTGCCCGTGACAGGCTGGGCAAGCACCGTGTGACCTCTGGACCTCATTTCTCATTTCCACCTTAGTTACCTGTTACAAAATAACAGCCTATGCCTACCCTCAGCATCTTAGTGGGTGCTTTCCATCCTTCTGGGCCAGCTGAGCTCAGGGATTGCCCTCGCTGTTCATGAGCTCATGAAGCAGCATCAGAAAGCGGCTGAGGCAGGAGTCACATGAGCAGGTGTGCAAGGTGGTGTCATTCAAAGTTGGGTTCTTCAGCTAGGATGTCTAGAACAGGAGAGAACTGACAAGCACTGACTGCCTCCTTCCCTCCCTCTCTCCTCTCCTCTTTCCTCTTCCTTGCCTTTGTCTCTTTCCCCTCCTTTCTCTCCTCCTCCTGTATGTCTCTTCCTTTCTCTGACCCCTCTCTCTCCCCCTGCCACCAACCTCTGCCTTGCTATCCATAAGCCTCAAGCTTCGTTATTATTGTTACGGCTGTGATGGTTTAAGGTTAATCACATTTCTTACATCGGACTGGCCAGGGATGAACAAGCATTTCCAAGGGGCCCGCTGAGAACCTGCAGTGTTTCTTCCTCTCGAACCTAGAGACCCTGGAAAGCCACTTTCCCAGGATTGTACTGCTCAAAACTCTAGGCAAGCAGATTCAAGTAAGGACCCTAAACAGGCAGAGGACAAGAGAGTTTAGCAAAGACTGGGTAGGGAGGGTAACTGGAGAGACAAACAGCTTTCCTGCCAGAACATAGCCGAACCTATTTATAACACGACTATCCAACCATTAATCCTAGCTACCACTGAAGCTATCAGGCTGTCAGTCAAGTGTGGATCCAGGCACTTCTTGGGAAGTGAAAATTTAGGGCCCTTGGTGCTTTATACATATTTACAACAGCGCTTCAGTATCAGAAACACTTAAGAATTTTATAATATACAAATATCAATAATAATAATATATAAATATTAAACCACACAGTTTAATATTAAATCAATACCTTTGCTGGCTTGAAAATATTTGAACCCAGGAAGCGGCTGATGCTGACTAATTTTGCTTTATTATAAAGAGGATTAGAGTCAGTCATGAAATTGAATAACAGTCCGTCTCACTCTGACCTCAGTATAACAGGGTGTTGTGCTAGGTGATAATTATGGGATGTCTCGCATGGAAAGGTGGGTAGTTTAGTTTTGTTGTTACTGTTTAATCATTTATTTGTAGGATAGACTTGCTAAGTCTGTTGATTTTGCGTTTATGGTAACTATATACCTTCATGACACAGAACCTGCCACTGGTCAAATGTCCCAGCAAGGTGAAGTGGTCACTTTGCTCAGAGTTTTTGTTACATTTCCAGGAAGTGGTAGGGAAGTCCTAGTTAGAATCACCTTTTGTAAAGGTCCAAACTGTGACTCAGAGATGTTAAATGATATTTTAAAGGGTCTCTGTTCATAACTGCGAGAGCTTGAATCTAAACCCAGAACACCTACCGCCTACTTTGACTTAGAAGGTCTACATTTTGGTGGAAACATGGGTTTACAAGCCACACTCACCCTCCATCAAGTTTAATCCCAGAAGAGTACTAAATCACCATAGCATGCAGATTTGGAAATAAAAACACAACCAACCTTCTTCATTCATTATTAATCACCAGTTCCAAAACTATAGGGCACTTCTAATATGCACTCCATCAGAGAGATCTCACCAGGCCACGTGAGAGGCTAGTCCCAGGCCCAGGACACCCCGGGCGGTTGGGAACGCCCCTCTCAGATGGTGAGCAGAAAGTGAGAGAGGAAGAAATTAGTCAGGTGAGAAAGAGCAAACGCCTGCCCAGGCTCAAAGTCTAAGAGTTAAAGAATCTGCAGCGACTGAAAGAACTAACTTTCTGACAGGTGGACAGGCTGGGGTGAAAGGCTAGCTGAGCGGGGTGGGGGATGGGGTGTGGGGGTGGGGGTGGGGAAGAAGCATTCCACATCCCAGGCTTGTGGGAACCAAATCTTGTGTAAAACGCCTTACAAAACACCTTGGCTTGTGGTTTTTAGATATGGAAAACAAAACAAAACAAAACAAAACAAACAAACAACAACAACAACAAAAACCAAGCAAACAAACAAACAAAAAAAAAACCCCAGCCTAGCATTCAGACCTTTCTCTTCCCGAAGCCTGGCTTCCCTCCCACGCATGTAGTGTCCTCTTGGCTTGCAGCCGGACTGAGCGGATTAAAACAGATCAACAGATCGTCTTAATATCGAGGAGTCATAGCCATTCGCTCATTCATGATCCCAGAGAACTCTGTTCCCCACTTGCCCCCTACAGATTCCGATCTCTCTGTGTTTAGGTAACAGGCCAAGAGGGTGGACCGAGTGATAGGGAAGGGCTTATCCGGCCCCCGGCTCTAGCTGGGGAACTATTGGCTGTAGATAGCAGGGGGTCAGGAAGAGTCACTCTTCTCTGGGGGTGTGGCCACAGGTAAGTTGCTTCTGCCCCATTGGATGGCTGCACACCCTTGTAGTTAGGGGCTGCACCTATGAGTTTTTAAAAACAAAGCTGTGAGAGGGATAGGGAGGTGAAGGAATACGGAAATGGCGGGGGGGGGGGGGGGGCGACGGATAAGATCGTATTGTGTTGTGCACATAACATTCTCGAAAAATAAATTTAAAGACCTTTTAAAAAAGACATACTGGGCACAATGGCTTAGGTTTCAAAGCGCTTTATTAACATCCTAGACTAACCACCCTGGTGTGTACATGAGAGCGTGCCATTGAAACGGCCTCTGCTCGGGCGTACCCCGGTGGAACCTGCGGAGAGCTGGCTCTCTCATTGCCCACAGAAGCAGGACGCTTCCCCATAGGAGAGAAGCCCCACGTTTCAGAGTCGAGACGTTTTAATAGGAAGGTGGCAAGGGTCACCTGCTGAGCTAAGTCTTCTCCTCCTGGCCACTGTCACCCCATTCTTCGGGGACCCTCTCAGAAGTGAGAAGCAGAGACTCTCTGAGCGTGTTCACGAATGGAGAGAACTCTTGCCCCAACTCCAGCAGAACACTTCCCCAGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTTGATCTGTGTGTTTGATCTGAGGTGTCCCTGGGAACTCTAGTGTCACAGCTGCTTCCCCAGCCCAGCAGTTTCCCAACCTCCACCCAAGGGCAGGCCCTCCCTTCTTTCCTGCCCTCCTTCCACCTGACAGGGACCATAAATAACAGAGGCTCCCGGTGTTCCCAGCCGAGAACAAAGTTGAAAGTTTGCCTGCAGCTCCCGGCCACTCCTGCTCCCGGGCCCTTCTTTGTTTTCTCCCTGGGTTTGTTTTTCTTCTACCTGGCTTGGCTGTTTCTTCATTCACTTTTGAGAAGAGCCCGTCTCCAAATCGCCCAGTTACACAAGTGCCCGGGGCTCTCTGGACTTGTGAGGGTCCCTGCTACTCTGACTGCCCTGGTATCAAGTTACTGAAAGTCTACACCCAGGCAGTCCTCATATTTACATACAAATAACTCCTGGGTTTGCTTTTATGTCACTATTGGGTCCTGCAAGAGGCTTGCCAGAGCGTCCTTAATCCAATCAGGAGGCACTTTGAAAGGATGTCTGTTGAGCGGTCAGAAGGATGTTCGTCGCTATTAAGTGTTGCCACACAAAATTTTTCGCATGTTTCGGTCTGAGTTTTTTTTTTTTTTTAAATCTTCGGAGTTAAAAAAGTGAGGAATGATGTACAGCTGCTCAGTTGCCTTCGACAGCTTGGAGATGCTGAGGGAAACGCTGCAGCCCTGGTGAAGAAGATCTGACTAGGGACGGGTTTGGATCCATACCAGGCTGGTGTGGATTGGGGCTGGTGTGGACGGCTTACTCTAAACCCCTGCTTAAGGAATTCCTGGAAGCCTCGGGAAAGTACTCCCCAACCAGTCGTGGTGGAAATGGCTTTGCCACACAGTAAGATCTTTCTTTAATTCCTGCTTGGAGGGCTCTGGTTTGGTTTCTGATGGAGAAATATGCAAATACCCCTCCCCTTGGAATACTTGACCTAGTGTGAAACAGAGTAACATCCGGAAGATGATCTGTTTACTGTTTTACATTTGGAAAAAAAAAAAAAAAGAAGAAGAAGAAAGAAAGAAAGTAGTTACCAGTGTGTTTCAAGACCTGATTGGTTGCTAAAAAGTTGAGCTCCTGTGGTTTCGAGAGAGTTGAAATGAATGGGAATTGTAAACAGCAGTGAATGGAGAAGCGAGCCATGAATCATTTGCCTCTGAGAGAACCTAGCATATACACATTTGGAACCTCTTTGGGCCAGCCAGCTTGTATCTAGAAAGGGAAGGAAAGGAATTTTAAAGAGAGACCGGGTTTGCTCGAGTGGAGGGAACTTTTGTTGCGCCGCCTGTGCTATACTTTGAGAGGGATGGGAACTATCCCAGAGGGCAAAAGACGATTGAAAAACCTGCCCCGTTGCTCTTGGAATGTGGTTTTCCGTGTGAGCTCACTAGGCACACAGAGAGCTTGGAAGAGCATTTTGCATGCATTAACTCTTTGTGTGGATAGTTGGAGCACAGTTCCTCTGGTTCCCCCCTTCTGGCTGCAGGAGCCCCTAGGTCAGGGCTAGTCTTTTAGAAGGCAGAATTAGTTACTTTGCAAGTAGACCTCAAGCAAGCGGTGGGAACAGCTGAGCTGACTCGTTAATCTGAGAGATTTAGAAACGGTTCAAAGTTAGTGTGCTCCGAGGTCTCCCAGGCAGGCGGGTCCTGCTCCCACCAGTAACTCCCGAAACTCGGAATAGATATGCCCCAGCCTGAAATCCTAAGAGGAAACTGGTTTAAAAAAACACCGCCAATCTCTTTCCTAGGCAGGTGAGATAGCTCAGTTGGTTTAAAAGCACTTGCTCAGCCTGACTCAGTTTGACCCTGAAACCCACGTAATGGAAGGCAAGAACTGACTCGAACGGTTGTCCTCTGACCTCCACAGGTGCCCTTTGGCACGTGCACACTAACACACACAAGCCAATAACTAAATAAAGCCGTTCCCTTCCCTCACTTTAAGGACAGTATTGGTGACATATTAGGCCTCATTGTGCAGGCTGTGTCCATTCAAACAAGATGCCATCATCATCATGGGTGGTAAAGTGGGGGGGGGGGGGCGTGACTCACCTGATAGATAAGCTTCATCGCTTAATGCACTGAACCTGGGAGGCAGGGAGTGGGTAGGGGTCATGCTTACATCGATCATCAACACTAATTGAGCTTGCTTCTTTGGTCAGCCCCTGCAATGGGGAACTAACCTCTCCCTCCACTGTTTCTTTCTTCTGTATGGCAGTTAAAAAAATAAAATAAAATAAAACCTACAGGGGTGCCTGGGAAGGAGATTACACCATGAGAGTCTCTTTTCTCCCTGATGGCCACATAGTCAAGAGGGAGGGCTTCTGACTGGCTTGTTCTCCACCTGCAG
Seq C2 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601:ENSMUST00000182884:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types