HsaINT0008124 @ hg19
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61898722-61900746:-
Coord C1 exon
chr10:61900110-61900746
Coord A exon
chr10:61898846-61900109
Coord C2 exon
chr10:61898722-61898845
Length
1264 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
CTTACTCTCTACATCTGCAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
GGAGCTCCATGCCACTCCCCGCCTGGGCCACTGCTTTGTTTTCTTCTAATGTTTTTCCTCTACCTGGGTTGGCTGTTTCTTCATTCATATTTGAGAAGAATCACCTCCTAATTAAATGTAGCACTTCGCTCTCTCCCTACATGAAGGCTGTCTTGGTTACCCGACTAGGCAACGCGCATTGGTATCAAATTACCGAAAGTCTACACCGGAGCAGTCCTCATATTTACATACAAATAACTCAGGGGCTTGCATTTATGTCACCATTCTGTCCTGCTAGAGGCTTGCCAGAGGAGTTTTTAATCCAATCAGAAGGAGCTTTAAAAGGATGTCTGCGAAGTGGTCAAAAGGATCTTAACCTCAATTAAGTGGGGTTTTTTAAAAAGATTTTTTTGGGGGCCTGAAATTTTGAAAATCTTCGAACTCTGAGTGGGGAAAGATGTATAATTCCTCAATTGCCTACGAGGATATCAAGATGCTGAGAGGAATTCAGCGGTGGTGAAGAGAGTGGATACAAACCAGGGATTGGTTTCCTTGAGCTGTTTTGGAGGTTGATTCTAAATCACTGCTTAAGGAATTCCTGGAAACATCAGGAAAACATTTGATCATCCAAGCCTAGTGGAAATGGCTTTACCGCAGA
Seq A exon
GTAAGATCTTTGAGTTGTACTTGGTGTGTGCTGTTTTTGTTTGAGATGCAGTGAATGTGCAAATAGCCCAGCCGTAAATAGTTACTTAAAATAATCTCTTGGTACTGGGTAGCAGCAGTAGAAAGTTGATCTGTTTAGTTTTTACATTTGCAAAAACAGTAGTTGACAGTGTATTTTTAGACTTGATTGGTAGTTTAAAAGCTGAGCTCTTGCGGTTTCCTGAGTTTAAATGAATGGAAAATGTAAACAGTACCGAATGCAGGAATTGGAAAATATATCTGGGGGAATGAATCACTTACCTTTGAGAAAACACAACATGTACACTTTTGCAATCTCTTGGCCAGTGAAGCTTGCGTCCAGAAAGAGGGTAAGAGTTTGCCTGTGTGGGGAAGGAACTTTTCTGCAGCCTGTGCTACCTTTTGAGAAGGATGGGAAATGTCCCAGAGGGCAAAAGACAATTGAAAAACCTGCCTTGTCACTCTTGGAATGTGGTTTTTCCATATGATGTCATGTTTTGCATACGTAGCTGGTAAAAGTATTTCACATAATTAACTCTTTGTCTTGATAATTAAAGAGCAATTTATATAGTCCTTTCAAAGTGCTAAAGCACCCATATTATCTCTGGAGAAGGCTGTGTTGCTTTCCATGTAGATTTCAAGCATTGGGACAGTTGGGCTGTTGTTAATTTGATAGGTTTAGAAGCATTTCAAAATTGATGTGTTCCAAGGCTCTCCAACCAAGCAAGTTATAGTTCACATAACTTGCTAGTTTCTTACTTAAGCCCCAAACTGAAATCCTGTGTGTGAGAAAACCAGTTTTTTTTTTAAATGTCTGTTTCCTTCCCACATATAATTTCAAGAACAGTAATGAAGAGGTGGTTCTTATTTTGTAATCCATGTCCATTCAAACAAGCTGCCCTCATCGTGGGTGAGGTGAGGTGAGGAAAACTATAACTGACATAAAACATCCACCTTTCTAGTCAGCTGAGGCTTACAGGGAAGCAAAGGGATACGGGTAATGTTTTCAGATTTGTATTTAATACCAGGAGTTGTTTCCGCTACTTAAATTCACTCTTGAAATTGTGTACTAACCTTTACCTATACCTTTTCCTTCTAAATGAGAGTTTCAAAAATTATCCAGGTGATAGGGGAAGGTGAATATGAGATATTGGGGGATTTGCTGATAACCAAAGGAGTGATTTTCTCCACAGCTGACACTTTCAAAAGGGAAGCTTTTGATGTGGGCTTACTCTCTACATCTGCAG
Seq C2 exon
GTGAAGATGCAATGACCGGGGACACAGACAAATATCTTGGGCCACAGGACCTTAAGGAATTGGGTGATGATTCCCTGCCTGCAGAGGGTTACATGGGCTTTAGTCTCGGAGCGCGTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-ANK3:NM_001149:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.458
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTCTGCGAAGTGGTCAA
R:
TTGTCTGTGTCCCCGGTCATT
Band lengths:
345-1609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)