MmuINT0015651 @ mm9
Intron Retention
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:100946186-100947137:+
Coord C1 exon
chr15:100946186-100946333
Coord A exon
chr15:100946334-100947007
Coord C2 exon
chr15:100947008-100947137
Length
674 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAAGCTGCTCTGTCCCCTAGACA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCTTGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGGTGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCCCAG
Seq A exon
GTAAGGTTGGGGGATGGGAAATGATAACCCCTGTCATGAGCTTCCTTGAGAACCTGACCTACATACAGTAAGATGCTTGGCTACCTGTCTTGGGTCTAGGCAGAGGTGAGACACCCTCCAGGGTAAAGGTTTGTCCTGGGGAGACGGTGCAGCTGCAGGGACTTATTCACTCAGGGTTGCAGGAGGAACTGCTCCTTGGCGTTTTGTCATAGCTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGGGTGAGATGCCCCAGGGCTCACCAGAACAGTTGAGGACAGTCCAGGCTTCATACATAACATCCTGGTCTGGGTCCCCAGAGAGTCACAGAGTCATCCCCACTCTAGATGGGTGAAAACCATCTTGACAGGGGTTGGGATAGGCCCTGGGGGAAAACAGACTTAGGAGGGAAAGGAGGTCCTAAGAAGAACTTAGTGGAAAGTGGGGGTCCAAGCTGCTCTGTCCCCTAG
Seq C2 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-Ankrd33:NM_144790:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
NA
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTCTGCAGGCACAGC
R:
AGCATGAGGGCTGTGTTCCC
Band lengths:
262-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: