BtaINT0018440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28131786-28132288:-
Coord C1 exon
chr5:28132124-28132288
Coord A exon
chr5:28131916-28132123
Coord C2 exon
chr5:28131786-28131915
Length
208 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CTGAGCTGCCCCTCCTCCAGACA
3' ss Score
6.39
Exon sequences
Seq C1 exon
GCGTCTGAGGCCCCATCCTGCCTGGACAGTGAGGCCTCTACCCCAAGCTGCACACTGGGGGCCCTGTACTGGGCCTGTGTCCGCAATGACCCTGCCCAGCTGCAAGCCATGCTGGATGATGGGGTCTCCCCAGAGGAAGCCACCCAGGTGGATGGCAACGGGAGG
Seq A exon
GTGAGCCACCCCAGAGGGCTTTGCAGGGCAGTGAGGGCGCTGTGAGCTTCAGGGTCAGCACCCATCGCCTGGGTCCTCAGGAGGGAGTGGGTAAGAGTGGGTCTCCCCAGGGCCTAGGACATCTCTGAGACAGTTGTGAGTTAGAGGACACAGGGCCCCCAAGGGGCTCCTGGAGGAAACCACAGGGGCTGAGCTGCCCCTCCTCCAG
Seq C2 exon
ACAGGTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113:ENSBTAT00000022764:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=60.0)
A:
NA
C2:
PF127962=Ank_2=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGCCCCATCCTGC
R:
AGCATGAGGGCTGTGTCCC
Band lengths:
278-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]