MmuINT1004355 @ mm10
Intron Retention
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:101115755-101116706:+
Coord C1 exon
chr15:101115755-101115902
Coord A exon
chr15:101115903-101116576
Coord C2 exon
chr15:101116577-101116706
Length
674 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAAGCTGCTCTGTCCCCTAGACA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCTTGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGGTGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCCCAG
Seq A exon
GTAAGGTTGGGGGATGGGAAATGATAACCCCTGTCATGAGCTTCCTTGAGAACCTGACCTACATACAGTAAGATGCTTGGCTACCTGTCTTGGGTCTAGGCAGAGGTGAGACACCCTCCAGGGTAAAGGTTTGTCCTGGGGAGACGGTGCAGCTGCAGGGACTTATTCACTCAGGGTTGCAGGAGGAACTGCTCCTTGGCGTTTTGTCATAGCTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGGGTGAGATGCCCCAGGGCTCACCAGAACAGTTGAGGACAGTCCAGGCTTCATACATAACATCCTGGTCTGGGTCCCCAGAGAGTCACAGAGTCATCCCCACTCTAGATGGGTGAAAACCATCTTGACAGGGGTTGGGATAGGCCCTGGGGGAAAACAGACTTAGGAGGGAAAGGAGGTCCTAAGAAGAACTTAGTGGAAAGTGGGGGTCCAAGCTGCTCTGTCCCCTAG
Seq C2 exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034:ENSMUST00000070875:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
NA
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTTCTGCAGGCACAGC
R:
AGCATGAGGGCTGTGTTCCC
Band lengths:
262-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types