HsaINT1003748 @ hg38
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr12:51888568-51889196:+
Coord C1 exon
chr12:51888568-51888818
Coord A exon
chr12:51888819-51889066
Coord C2 exon
chr12:51889067-51889196
Length
248 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
CTGAGCTGCCCCTCCCTCAGACA
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
Seq A exon
GTGAGATGTCCTGGCTTCCCAGAACAGCTGGGGGCATCTTTGCATCCCCACCACACCGTCCTGGCCTGGCTCCCTGAGAGGGGTTCAGGGGCAATACCTCCTGCAGTCCTAAGGAGGAAGGGAATGGTTAAGGGCGGGTCTTCACGGGGTTTGGGGCAGGCTCTGGGACAGATATGGGTTTAGAGGGTGCAAGGGGCCCTGGAGTGGCCCAGGGGGAAAGCAGGGGATCTGAGCTGCCCCTCCCTCAG
Seq C2 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612:ENST00000301190:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=39.3)
A:
NA
C2:
PF127962=Ank_2=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAGAGCTGGCATTGC
R:
CCTCCTTTGTCCTGCTGGTTC
Band lengths:
301-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains