HsaINT0008885 @ hg19
Intron Retention
Gene
ENSG00000167612 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:13788]
Coordinates
chr12:52282352-52282980:+
Coord C1 exon
chr12:52282352-52282602
Coord A exon
chr12:52282603-52282850
Coord C2 exon
chr12:52282851-52282980
Length
248 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
CTGAGCTGCCCCTCCCTCAGACA
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATGCCAGCTGCATGAGAAAAGGGACTCACCTTCTGGTTCCCTGCCTGGAAGAGGAAGAGCTGGCATTGCACAGGAGACGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGAGACCCCCACCCCAGGCTGCAGGCTGGGGGCCCTGTATTGGGCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACTGGATGGTGGGGTCTCCCCAGAGGAGGCCACCCAGGTGGACAGCAATGGGAGG
Seq A exon
GTGAGATGTCCTGGCTTCCCAGAACAGCTGGGGGCATCTTTGCATCCCCACCACACCGTCCTGGCCTGGCTCCCTGAGAGGGGTTCAGGGGCAATACCTCCTGCAGTCCTAAGGAGGAAGGGAATGGTTAAGGGCGGGTCTTCACGGGGTTTGGGGCAGGCTCTGGGACAGATATGGGTTTAGAGGGTGCAAGGGGCCCTGGAGTGGCCCAGGGGGAAAGCAGGGGATCTGAGCTGCCCCTCCCTCAG
Seq C2 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTTCCAGAGTGTTGTGGCCCTGCTCAGCCACTGTCCTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTCATGTTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167612-ANKRD33:NM_182608:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=39.3)
A:
NA
C2:
PF127962=Ank_2=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAGAGCTGGCATTGC
R:
CCTCCTTTGTCCTGCTGGTTC
Band lengths:
301-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)