DreINT0030193 @ danRer10
Intron Retention
Gene
ENSDARG00000055638 | ankrd33aa
Description
ankyrin repeat domain 33Aa [Source:ZFIN;Acc:ZDB-GENE-080520-2]
Coordinates
chr23:27941974-27944529:-
Coord C1 exon
chr23:27944168-27944529
Coord A exon
chr23:27942104-27944167
Coord C2 exon
chr23:27941974-27942103
Length
2064 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
3' ss Seq
AAACTCTTATTCCCCAATAGAAT
3' ss Score
6.28
Exon sequences
Seq C1 exon
ACTTCAGAGAGGAAGCAGTGAGGATGAAGATGATGATGACGAAGTGCCTGCTGAGCGTGTGAGTCCTGGCTCGTGCTGGCCAGATGGCTGGGGTTAAAGTCGCGGTGCAGGAGGATCCAGATCTGGGCTCGGGTCCAGACGAGGATGCCTCTGAGCTGTCAGTTTCGGAGAATGATTCAGACTCAGGGAGTGTGCTCTCTGATGACTCCGTGCTCCCGAACTATGAGCGGGAAGATGCCAGTGGAGGCCCTGCCAACACCTTGTACCAAGCCTGTGCCAAGAACAATGCTGCGGCCCTGCGTAGAGTTCTGGAGAGGGGCGTTACAGTTGACGAAGTCATGGAATTGGACATAAACGGAAGG
Seq A exon
GTAGGGAGTCAGTTCTCATCATATGTGTACACTGTAAAACCTGATAAGTTCAAGGGGTGTAACACAGAAAGACACAAAGATTTTTACTGTTCAATTTACACATTGTTATTCTTTAGGCGAACAATTAATCTGTGCAAGTGAAACCACTTAAAAACATTTTTGGTTTTGTCAATCTTCAATCAAAGTCTGATCATTGGCTTCTGGCATGTCATGATTTTGCAAAGTATGATGCAAAGTATTTGCAAAGTATGATGTTTAACCTTTTTTTAGGGCAACTTAAACTTGAAGCTAAAGCATTGCTTATAAGAATCGCTCTATCCAACACTGGTATTACATTTATTGATGACTGAAAATTAAGAACAAACATGTTTAATGGTAAAAAGACTATTGGAGTACCCTGAAGATGTATTATATTTCAATAACAAAACACTTATAAGTAATTACAGACTGCTTTACAACATGATATTATAGTTAGTACAGGAACCTCGACAGCAGACCAATGAAACCCATGGTAGTTATAGTAGTTTATCCATTTTGTTTAGGCTAACTCATTAGCAGCTTGTACAGCGTTGATTGTTTGATACCAGACCTGAGAGTAAAAAAACTTGATGACTATTTACAATTTCCTAACTAGAGAGAATATACAATTTTGTTAATTGTTTTTTTTTTATAAGAACGCCAAATCAAGTTAAGATTTTCTTCTGTAATCCTAATTTAGCATTTAACATGTCATATTTTATTAAGACCTAAGATGAGAAGCTTTCTGTAGTACGCCCAGAGATTATTCAAATATTTAAAGTAATACATTTCCAACACTTTGTTTTGTTTTTTTTTGCTTAAACCACATTAACTCTAACCGTTATGCCAGTTAGCAATGGCATGTGTTAATGCAACAAACCAGAGACTATTCTGTACACTTGCAAGCCTATATTTGCAAATCATGCAGTATATACAGTCTTAATAGTTTTTTTCGTCAGCCCACGCTCGACCAAACTTCATCAGGCATACTTTATCCCAATGGTAACCCTACAAATTTTAACATGACAAAAACATATGTACAGTGCTCAGCATATATGAGTACACCCCCCACAAATCTCTCATTTAAATTCAGATTTTCTATAGGAAGCTTTACAATATTAAATTTGTGCATATATATTTGTTTAGTCAAGAGGATCTCAAACTTTTCAGCCCGCATCCCCTAAAATAACAACACCAGTGACTCGCAACCCACTCTATGCTCAGAGGTGGTTATAAGCATACAAATATTGCACACACACACATAAGAACTATATAAACAAGCTTTCTGATGACACAAAACAGTGCAAAAGTCTATTTTTATAGTCATTATTCATTTGTTTAATTTAATATTAATCTCACTTAATGAGAATGGTGAGCACAACGTTTACAGCACAAGACTATTCTGGGTTTGATTTTGGAGACTTGGAGCCACTTGGAGATCATCCTCCTTGTTCAGTCATGGACTCTGTTTTTAATGTACAGTATTTGAGTGCTATAAAGGTGTCAAGTTAAACATTGTACCGTAAAATCAATCTGCTGCAACTAACGTTATTGCTGTGATGTTAATCTAGCAAAATAACCCCAGGGGTCGCAACCCAATGAAAAAAAAAAGTTTTTATATTATAAATATATTAAATATATGATAAGTTAAAAACTAATTTTATATTCCACAGGTTATGGCTAAAATAAGATAGTTCTAATAGTTTAAAAATATATGAGATATGAGATTAATAAATGGATAAAAATATTAATTTTCAAAATAGGGTGTACTCAGTTATGCTGAACACTGTAAATCCAAACATGGCACAACATTAAAACCTAATTCATGCAACAGTCTGTTCTTCCTGTGAAAAAACACACCGCATAACACTTATTTTCAACATTTATACAATACAATCAAAATCTGAGTTCATATAACCTATTTCGATCAAAAACTTTTATTAATACTTGTGTGAAATCAACTTGGTTTTACAGTGTACCAGAAATTTTGCAAAAAAAAATTGTTGACTTCATTTTACCTGCTGACAAACTCTTATTCCCCAATAG
Seq C2 exon
AATGGTCTGATGCTGGCAGTCTCAAAAGGCTTTGTGGATATTGTGTATGGACTCAATCAGTGCCCATTTCTGGATATCAATCATCAGGATAATGATGGCAACACTGCACTTATGATCGCCGCACAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055638:ENSDART00000143662:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=35.5)
A:
NA
C2:
PF127962=Ank_2=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]