MmuINT0020230 @ mm9
Intron Retention
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73688921-73691948:-
Coord C1 exon
chr2:73691852-73691948
Coord A exon
chr2:73689040-73691851
Coord C2 exon
chr2:73688921-73689039
Length
2812 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CTTCTTGGCATTTATTTCAGATC
3' ss Score
8.84
Exon sequences
Seq C1 exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq A exon
GTTAGTATATGCTTTTATTAATGGCTTATATAATATTTCACCCAGAATGTGCACAATTTTGTGTATTCTCTGTAAATACTATAGTCTGGTGATAGTCCAATTGCTTCATTTACAGTAAATGTTAGCAACATGTATTTACCCATTACATTTCTATATGTTCTTTTGATCATTCATTTCACTTTTTTGTGTGCTTTTCGAATACCCATTTGAAGTCGGTTTTATGGAAATTAATTAGACTCCTTGGAGCATTCATGACTTCTACAGAGTATGTTTAACTGATAACTGAACTCATTGGTATTTAGTGTTTCTTTCAGTTATCATACACCTAGTTTTCAAAACGTTGTGAAGATAGAAAATGATCAAGCACTCCCTAAACTTGGTCATTATAATTTTGTTTAAAAATGTCTCAAATGAAATGTTTTATTAACAAAATACTCTAAAGCTGGGATGTAGATCAATAGTACAATGCTTGCCTGACATTCACAAGACTAAGGTTTTAATCCCCAGCACTGCAAAATAAAACAAAATGTTCTTCATAAAGAAAACCTAAGTTCAGTTAGTATGTGTGTATTTGTGTGTGCTTGTGTGTGTGTGCATACCCTATAACCATATGGAATCACCCTGAGCAGATTATTATTTTTCATATGTAAACAGAGGAACCCAGTTCATATGTTAGCTTACTCTCACCCTATCCCATATTAGCTGTTTTCTTTTATTTTTTTATAACACATAAGCTATGTACTTGAATAATATATACGATGTATAATTTAAGTATATTTGTTTCTTTTCTAAATAAACATTGTGATAAGTTCTGTGTCAGAATTTTAGCTCTCTGTCAGAACTACAAATATGCATGTCATAAATATAGAGTCTAGAGTCCTTTATTAAGTGAAACTTGTTATCCTATCTATAATTCTAGAATTTAACTAGAATACTGGTAGTACTTTTAAATTATAACTTAGTCTAAACACCATGTGCAGTGCTTTGGAGAGGTGTTAAGGCAGTATCAGATGGTTCCTTCTGTGCTTTTAGTACTGTAATTTTTGTAATGAATAAATGAGAGGGAGCAAAAAGTTGGTGATTTATTGAAAACAACTTATGGAGGGGAACTTTCAACAGTCTTCAGTACTGTAAGAAAAAGGGACATGGAACAGAGTGAAGTATGCACTTCTTGGAATGTGTAAATAACAAGGAGAACCACAATAAAAAAAGTAAAGAACAGTAATTAAGGAAAACTATAAACTACCTAGAAAGTGTTTTCCTGGGTATGAAGATCTTTGTTTCCTTGATACTTACTGTCTAAGACAGTCTCTATAAACTTTGATCTCAAGAATGTTTTTAGTTTGGTTCCTAGATGTTACTTTTAGTACAGTATATATAAAAATAGAGCACATTCAACCACAGCATTTTTACTAACATTGAAATAGTTTAATATAACTGTAAATAGAATGCATGATGATCAGCAGCCTTAAGCAATCTGCATGTTAACCAGTTGTGCCTGTGATGACTTTTCTCGAATCTGATGGTACCAGTAGTAATCATCAATAAAACTGATGTGGGCTTGTACATCTCTGGATGTTTTCCTCTCTAATGTCAGTTGTGTTCATCCATGATCAGCTTAGAAAAATCCTTTGGGTGTGAACAGTATTCACATTTATATTTGACTAATTTGAATTAAAATAGACTTAAGCTGATATGTATACTTAAAACCCATATTAAAATATTATTTTGAAAGTCTTTGGGTCTAAAAATGAGGGTATAAGTTAAAGATTAAATAATGGGTAAGATTATGACGTAAGTGGACCCTGCAGTAATTCTGACACTGTTTTCACTGTCTGAGACAAGCCTACCTTCTGTCTAGCGTGAATGATAAGTGAATTATTTTTGCTAAAAATATTTGTAAGTAGTACATGTGAGGGCAAAGATAAAATTAAAATACCCACTGTAGAAACTCAGTAATTAACAGATATCTGACTATCAGCTAAACAGATTTTATCTTAAACCAGTGCTGTACTAAGTAGACTAGATTCTGTGTATAACTTCTAAAATTGCTGCCCTAAAATGCATAAAATGTGAATAAATATTTAATGTACTACCAACTCTAATATAAACAAATATCCCTCAAAATAATAAAACTAAATTGGAAAGACTTGTAAGGTTTGTGTCATTCATTCATTTGTTCTGCATACAATACATGAATATTCAGTATAATGCTAATATACATGTCATTGAGTATATATATATATATTGAGATATCGTTGAAATAGTTAGGTTGTAAGAAAGTTGAGTTCACATCATTATTAAATTAGGCTAAACCACTTCTTTTAGGGGGTGGGAAAATTTTGCTTTCACTTTTTTCCCCCTTTCATTATTTTGATGTAAAAATGTATATTAAGCTTGACTTCATAATACTTTTATGAACAGATAGTGAATGTACAAAGTTAAAATATGTATTTGCTCTCATTAGTTTTCCCTAAAATTGTATGCATCTAACAATCAGAATTTTTAATGATGTAACTTTGAAAAATTCTTAACACTTTGTTATAGAATAGTAATTATTTCTCCAAAGTATGCTTATTTTACTCAGAGTAGTACACTAAGTATAAAAGAACTTTGGTGAAGTTGACAAAATATCTTGATATAAAATAGAGCTTAATCAAATTTTGTTTGTTTTAAAGAAAAGCATCTCTTTAAAGAGAGAAATAACATTGACTGAGCAGTGCCACTGACCTGTTCATTCCTAGCAGCGTTTTAGAATCTTCACATGATCATTTGCATTTGTATGCTTAGTACTTCTTGGCATTTATTTCAG
Seq C2 exon
ATCAGACTCCAACGCCAACAAGATTCCTAAAAAACTGTGAAGAAGTGGGTTTGTTCAATGAGTTGGCAAGTCCATTTGAAAATGAATTCAAGAAGGCTTCCGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104-Atf2:NM_001025093:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PD(57.7=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: