HsaINT0013797 @ hg38
Intron Retention
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:175118251-175121540:-
Coord C1 exon
chr2:175121444-175121540
Coord A exon
chr2:175118370-175121443
Coord C2 exon
chr2:175118251-175118369
Length
3074 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CTTCTTGACATTTATTTCAGATC
3' ss Score
8.72
Exon sequences
Seq C1 exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq A exon
GTTAGTATATGCTTTTATTAATAGCTTGTATACATATTTCACCTGGAATGTGCACAATTTTTGTGTATTCTCTGTAAATAATATAGTCTGGTGATATTCCAATGACTTCATTATAGTAAATGTTGGCAACATGTATTTTACCCATTACATTTTCATGTTTCCTTCTGACTATTCATTTCATTTTTTTGTGTGGTTTTCAAATTTATATTCCAATGTCGATTTTGTGGAAGTTCATTAGAACTCTGGGAACATTCATACCATCTACAAATTTTACATTTAACTAATAATTGAACTAACATGGTATTTAGTCAGCATTTCTTTTAGCTGTCTTGTACAACTGACTTACAAGGCTGTGTGAAGATAGAAAATGATCAAGCTTCTCCCATTGGAGAAAGAACAGTGAGCAGACTTGTTCATTAGAGTTGTTTATATTTCTTTTCAGACTAAACATTTGTATTAGTAAAATATTCTCAGTAAGGAGGCTCTAAATTCAGTCAATGCAGTTTTTGTGTGTTGACACTATGAACGTACAGTATCACCTAAGCAGATGATTATTTTTCACTGTATGTGAAAAGAAAAACCCAGTTCATACATTGGTTGATTGTCATTCCATGCTGTATTAGCTGCCTTTTTTTGGTATTTAAATATATACACACACACATCTATGTATATATACATATATGTCATGTATAATTTTGCTACTTTTTTGTATATTTTATAAGTATTATGATAAAACAAAACTATATAAATTTCAGATCCTTTGTGTCATCACAGATTTACATATCATAAATATTCAGATTAACTCCAGATTTTTCTTTTCTCTTGTAAAGCTTGTTATATGTCATATAAGTCTGGAATTACACCCAAATACTGTAATACTTTTAAATTATTAATCAGTATAGAGACCAAATTGTTCTATGCAGTGTTTTGGATAGATAATAAAGCAAATATTCGGTGGTTTTCCCTCTACTTACAGTATTGAAATTTTTGTAATGAAGAAATTGAAGGTAACAAAGTTAATTTATCGAAAACAATATACGTAGGAAAAATGTAGGGGAACTTCCAACATATCCTAACTAAGTTCCATAAGTAACTTAGAGATATGTTACTTATACAGAAGAGTGAGATAATGCTTTTTTTTTTTTGGAGTATTTTACATTAGACATTAAGAGCTAGAACCAAAGGAACCAAACAAGCAAAATAGTAACAACCTCGAAAGTTCACTCTCCTAGGCATGAAGCTCTTTGTTTCTCTGAAACTTTCTGCCTTAGCACAATCTCTGTCTGTGTGTAACTCTTTAACTCAAATATGTTTTGAAATTGGTTTCTAGAAATTACTTTCCTGTCTGATCACATTTAATGCAGTAGAAAAATAGAGCACATTCAAACACAGTACTTGACCTTTTTTTTCACTAACATGTTGAGATGAATAGGTTAACATTACTATGCAAATAAAATGCATGATGTGTGTGGTATATTTTTGGTGATCAGTAGCCATATGCAATGTGCATGTTAAATGATTGTGCCTATGTTGACTTTTCTGAAGTCTGATGGTTCCAGTAATCATTGATAAAAGTGACTTATGCTTATGTATTTTATTTTTTTAAGATTTTCCCCTCCCTTTAATGTAAGTTAAGAGCCTTCTGATGAACTTAGATAGACAAACCCTTTGGGTGTGAACAGAAGAGTCACATTTAGATTTGACCTACTAATTTAGTCATGATGGACTTAAGCTAATACATGTACTTTACTTACTGTAATGTGATTTTTGAGATCTTTTGGGAGGTGGGAATTAAGGGATAGGCTAGAAACTAGTAAAATTATGATATAATAGAGTCCTTTTAGTAATTCTGATATTACTAACAGTGCCTGAAACAGGCCTGCATTATGTCTAGTTTTGTATTACAAGTGGGTCATTTTAGTGTGAAATATATTTGTACATAGTAAAAATACTAGTCCTCTAGGTATACATGTGGGGGGCAAAGGTAAAATAGGAAGTAATGCCCTCTGTGGGGACATAATGGTTAACAAATATGTAAATTTTAATCTTACAAAAGGAATTAGGAGTATTTTCTCTTAAACCAAGAGTCTTCCTTAGTAGAGTACTTTTACTTCACTTAGGCTAGATCCCTGCTATAGCCTGTAAAATTGGTGCTCTAAAATATATTAAATGTGAATAGAATTTGAATGTGCTACCAACTCTAATCAATATGAATAGACACCCTTGAAAATAGTAACACTAAATAGGCAGAATTTATAAGTTTCTTGCTTTTCATTCAGTGTAAATCTTACCTGGCATTTTTTGTAGCCTATACATGGACACTGAGTACCTATGTTAATGTACATAGTAGGAGTACATATTCGAGTAAAGTTGAAATGTTTCATGTTGTAAGAAAATAGAGTAGACTCTTTCTTTACTCCTTAGGAATTAAGCTAGAACATTCTGGAGGCATGTGACTCACACATATTCCTTGTACCTAGCTTGTAAAATGCATTAAATTAGAAAATTAGTTTCAGTAGATAGTGGTAAAAAGAGGGTTTGTTGTTTTAGGGCTGTTTTAACTTTTTTTTTCTTTCTTACAATATTTTTATCTACCTATTAAAGATTGTTTTATCTTAGTTTGCTTTCATAATAGAGTATGAACAGCTAGTGGAAGAACCAAGTTAAAGCAGATATACATGCTCTTATCCTAGTTTTCCCCAAATTTCATTTATTTAAATAATTGTAGTTTTTAATAATGTAAATTTAAAAAATTCTTTATACTGTGTTAGATAATAATAGTTTATCTCTTGAGTAGAGGATGTTTATGCCATTCTACTCAGAAAGAAGCAGTGGACTAAGGAGCAAAAAGGACTTCTTTCCTACTTTCATATTTCATAGTTCTTAAAGTTGGAGGAAATACGAAGTACAACAAAAATTTAACCAAATTTTGTTTGTTTTAAAGGAAGAGGTCTTTCCAAAGAGAGAATTAACAACTGACTGAACCAGTCCTGCTAATTTGTTAACTTAGTAGCTATATTTTAGAGTCTTAACATATTTAAATATGCATGATTACTTCTTGACATTTATTTCAG
Seq C2 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966:ENST00000264110:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development