BtaINT0022495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002295 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:21787236-21790185:+
Coord C1 exon
chr2:21787236-21787332
Coord A exon
chr2:21787333-21790066
Coord C2 exon
chr2:21790067-21790185
Length
2734 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CTTATTGACATTTATTTCAGATC
3' ss Score
7.92
Exon sequences
Seq C1 exon
CGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTG
Seq A exon
GTTAGTATATGCTTTTATTAATAGTTTATATACATATTTCACCTGGAATGTGCACAATTTTTGTGTATTCTCTGTAAATAATATAGTCTGGTGATATTCCAATGACTTCATTTACAATAAATGTTGGCAACATGTATTTTACCCATTACATTTTCATGTTTCCTTCTGACCATTCATTTCACATTTTTGTATAGTTTTCAAATGTAGACTTCAATATCATTTTTTGTGGAAGTTAATTAGGATCTGGGAGCATTCATACCATTTCCAGAACTTACATTTAACTGATAATTCAATTAATGTGATGTTTAGTCATTGTTTCTTTTAGCTGTTTACATCTGCTTTACAGTGCTATGTGAAGCTAGAAAATGATCAGGCTCCTCCTGTTGGAGAAAGCAGTTAGCAGACTTGTTCATTAGGATTTTGTTTATGTTTCTGTTTGGACTAAACATCTGTGTTAGTAAAATACTCTCAATAAATGGGGCTTAAATTCAATAAATGATTTTTATTTTCCTATGTTGCTCCTGTGAACATACTGTATCACCTAAATGGATGATTATCTTTCAGTATGTGAAAAGAGAAGCCCAGTACATGCATTGGTTTATTGTCCTTCCATGCTGTGTCAGCTACTTCTTTTTTGGGTATTTATAGATACATACATCTCTGTATATGTATACACACAGAAGTATTGTGATAAAATAATTTTATATAAAATTTAATATATAAATTTCAGTCCTTTTGTCATAACCACAGTCATGTAGTCCAAATATTCAAATTAATGTTTTAATTTTTTTCTCTTGTAAAGCTTAGGTTATATATTTGTAAGTCTAGAATTATATCTAAATACTGAATATTATTAATACTTTTAAGTTATTACCCAGCTTGAAATCAAATTATCTTTCATAAGCATTGCATATGATAATGAAGAAAAAAGATAATTCTTGTCATTCAGTATCAAGATTTTTGTCTTGAAAAAACTGGAGGTAAAACAGATAATTCACCAAAAAACAATTTGTTTAGGAAAAATGTAGGGAAACATTCAGCATATCTTTATTTCTGTAAGTAAAAGGAAGCAGGTAAGAGTGTGGTGTGCATTTCTTTAAAATCCCATGTATCAGATATTGAGAGAGAAAACCAAAAATGCCAACAAAATAACTACAGCCTGGAAGTTTCACTCCCCTGAGCATGAAGGTCTTTCCTTCTCTGGAACTTCTTGCTTTAGAGCCATATCTCTCTCTGTAACATTTAACTCAAAAATATTTTGAGATTGGTTTCTAGAACTTACTTTCCGATCTGTTTACATTTAATGCGCTAGAAAAGTAGAACACATTTAAACATAGCACTTGACTTTTTTTCTTTAAATACATTTGAGATCAGTAGTATAGCGTAACTGTGTAAATATAGTGCATGATGCGTGTGATATATATTTGATGATCAATAGCCAAAAACCACATATGCATGTTTAAACAGTTGTGCCTGTGTTGACTTTTTTCTTTCCAAGCCTGATCATTATAGTAATTGCTGATAAAAAATGATTTTTGCATATGTATTTTAAAGACTCCTCTCCCTTTAATACAAAATAGGAACCCTCTCTTAGGCATAGATAAATCCTTTGGGCATGAACAGAAGAGTCAAATTTAGGTTCAGTTTACTATTGCAGTCATGATGGATGGACCTAGGTTGATACAAGAATGCTGGGCCCTTATTACCATTTTGTATGTCTTTGGGGGAGTACAGGTTATGTACATTGCAGACTGTTAGGTAAAATGATGACAAAAAGTCCTTCAGTAATTTTGATAATACTACTACTGTCTGAGGTAGGCCTATATTATATCTAATGTGTATGACAAATAGATCATTTTAGTGTAAAATATTTATATGTAGTAATACTCTGTGTGTACGTTGGGTTGAGGGTGATGATAAAACAGTAAGTAATGCCCACTCTAGGAACCCAGTAGTTAACAAATATATATTTTAATTTCACAGAAGGTTTTATGAGTATTATATCTTAAGCCAGGAGTCATCCTTATACTTTTATTTAGTTTAGGCTAGATCCTTGATGTAACTTATGAAGTTGATGCCCTAAAGTATATAAAATGTGAATAGAATTGAATGTGCTATTAATCCTAATCAATGTGAGCAAATAGCCTTGAAAATAATAAAACAGGCAAAATTCATAACTTGGCTGTTTTTCATTCAGTGTAGACCTTAACTAGCTATTGTTTTGTAATTAATATGTGCTCACATGTACACCCAGTTTGTGTTTTAGTGCAGCATTGTTTCATCTTAAGCTTGCTTTCATAATAGATTATGAATACTAGTGGAAGGGCCAAGTTCAAGCAAATATACATGTTCTGGTCCTAGTTTTCCCCAAATTGCATGTATTTTAAGCATTAGTAAGTTTTAATACTATAAATTTTTTTTAATTTGTGTTAGATAATGATAATAGTTTATCTCTGAATAGAGGATGCTTATGTCACTCTACTCAGAACCTGTGGAATAAGGAACAAGAAGAAATTCTTTTCATACTTTTATTGTTCATAAAGTTGGAGGAACTACCTTAAACTGCAACAAGAACTTAACCAAATTTTGTTTGCTTTAAAGGAAGAGGTCTTTCCAAAGAGAATTAACAGCTGACTGAACCAGTCTTGCTAATTCATTAGTTTACTAGCTAAAATACTTTAGAGTCCTGTATGATACTTAAATCTGTGTAATTGCTTATTGACATTTATTTCAG
Seq C2 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCAAGTCCATTTGAGAATGAGTTCAAGAAAGCCTCAGAAGATGACATTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002295:ENSBTAT00000002963:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PD(57.7=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]