MmuINT0021708 @ mm9
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68142252-68147933:-
Coord C1 exon
chr5:68147889-68147933
Coord A exon
chr5:68142325-68147888
Coord C2 exon
chr5:68142252-68142324
Length
5564 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGCTTTGTTTTTCCCTTTAGGCA
3' ss Score
11.73
Exon sequences
Seq C1 exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
Seq A exon
GTAAGCTACGTGGTACTTCCACTGCTCTCTTTGAAAGCTTCTGATGTATTGCTTTGTAAACAGGCTTTTCTGGTCTCTGGGAGCCATCTTCACAGGTGTTGGGTGATGATGCTCTGTACTGGGTATTAAACTCAGAGTATCCTTGATTTTTCTATCGAAAGCCCTTGTAAACATATTCTAAAGCTTTAAAGGTTGCTGGAGTCTTATATTATTTATCTATAAGGCGGTAGGGATCGATTCCAAAGTGCCTGGGCAGGAAAATCTGCTGCTGCAGCAATTAAAGCTTGCTTATGGTTTTTTTTTTAGCTCAGCACTGCCCCCTTCTGCCACTGTGCGGATAACGCGCCCATGGACCAGATAATGCAGCTACAGGCCCAAGTGGTACAAGTTTCCTTTTAACATTGTTCATTATTTCTATGTCTCTTCAGAGGCTATAAAATGAAGACCTTTAAATGTAAGGCCAAAGTGTTCTAGAACTAGACTTCCTGCAACCTATCAGTAAATGTACATTCATCATAGATTTATTAAAAATAGCATAGTATAAATTTAATTTCACTCCTATGGGAAGCTTTTTGCTTTTGTTTTGTTTTACATTAAAATTCTTTCAGCCATGTATTTGCATTTTTATCTAGGGGAATTTAGTGTATTTTGTTACTTGTATGATTTGTCATGATCTTGTGGCAAATAAAATTTGAACAATTATAGTTTCTTTAAAGCTAGTGATTTTGAAAAAAAGACTTCTATTTATCTGGACCTCATAGGCTTTATGATTAAGTTATATTTCCACGATCCATTGAACTCCAGTTACAGAATAAGTTTTCAGCCTTCTTGGGATTTATTTCAGTAAAGTGGGGATTTGATATGAGTTTTCAGTAAGCCTCATAGCACCCAGGATTACAGAGGCAGCTGTTTGACTCCTGTGACCGGTGCCACCAACAGTGCTCATTACAAGGAGTCCTACACATTCTGACACCTATCACAGTCATTTGGCTCTTCATACCACTCAGACGAGCATTTTATCATTGCTTGCCTTAGCCTTGCCTACATTCCTACTTATCTGGTCCCGCGACCCTGTAGTTAAAGCTTTTACTGTGGATACTCTTTGACCCAGGTCAGATGTTATCTAAATAAACCCTGCCTCCTTTTTTTTTTTTTAACACCTATGCATCTTTATATGCTGCTTGTCTATAGGACAGTTTGACCCATTTTAATACCATTAAGTACTGTAGAATTGATACACATATCTCTCTTAAGAGACATGACTCCTTTTTCTTAGTCTCGCTGTGGTTTTCTCCAAAGTCTTATATTATTTTCCCAGATCATTTAAAACATTAGACTTTGAGCAGGGGTTGTTTCATGCCACTAACCACTGTTGGAAAAGGGGTTATGTCATTTATCTTGCTCATAAGTTTTTTTTTTTTCATTAAAGTATCTTTTGGGGGGGAATCTAAGTTCAAATGAAATATAACAACTTTTTCATGAATTATGTATTTTCACTCTGCCATTGAGTCTAAAAGTGCACCAGGAAAGACGAGTATCATTTTATGGAAAAGGCACTTTGTTTATTTGTATACTTGGGGGGGGGGGGGGGTCTCTGTCTACACTTGTAGGTTTGCAAAGGTAAAGATGCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTTCTGTGTAGGGTTATGTGGAGTGGCCATGCATGTGAGCTTTGGACTCTGACCATCAATGTTTAGACCCTGACCTGTCCTTCACACAAGTTACTAACTACCTGAGTAGACTTATTGGAAGACTATGACCACCATTAGCCGTTAAATCAGTAGGAAACATTGACAATTAACTAAGCCCTAACTAGAAGGCTAGTGCTGGTGGCACTATAATTCTCAGTCTGCACCATCTATCTGACATGATCATTTTCAAGTTGATAGGTTTTATAGAGAGAAGCCTGTAAGTAGTCTCCCCAAGAACACAACCAGCGGACATGGGTGAGAGCCAGAGGTAATCCTGGCTTAGCCTGATTATGAAAGGTGTGTTAGTGCCGTCACACGTCTGTAGACTTGAAAGACTTGTGTTTCTTTTGGAGCACGGGATAGCTTTGCATTTCAAGCCCTAACTGATTTTATTTCAGTTGAATTGCTGAGGTTGTTAAGGAGAGGCAAATTGAACATCTACCGTTTGACTGAGTTGAGGAACCCTAACTCAGAAGCTCATACAAGACTCCATACTTCCAAGGGCCTCATCTAATTGGTTTTATATTGCTGAGAAAACCAAGATCAACTGTGGCCGTGGTGGAACCCTGTGCTCTGCATATGTGACAGTGGCTCTATGCTACTGCTGCAGGAGGAGAGACTATGGAAGACTCTCTCCAAAACTCTAGAAGTCATCTCAATAGCTGCTTGGCAGCTTTGTCTGGCAATGTGAAGTTGACTGAATGCCACGTAGCAAGCTTGTAGCTGTCTGTTTAATTGTCCTGCTTGAAATGGCACTCACCACAAAAATGTTAAGAAAATCCACATGTGAAAATTATGTGTTTATATTTGGTCCATTCTAAAGACCCTTTCAAATATACTCTTGGCATTAAAGACTGTGCAATAGCTGAAATCCTCTAAAAATGTATTAATATAAGTGATTTGTCTAGATTATGACTTCCCAGTGCATAGCTACTAACTCTAGAATTGGCACTGTTTCCTGTTGTTGCCAAGAACCATAAACAAACGTGGAGACTTGGAGACCAATTCCTTTCTATTAAAAACCATTATCTAAATTGATAGTATCAATATTGGAAGGACTAGAGAGAAAAACATCCATGTAATTATAAGTTATCACATGATTACTTTCAAAAACCCACAAATATTCATAATCATTTTCTCTTAAAAAATTATTTTGGAAAGTTTAAATATAAGCAGAATGAACAAATGTCCCCATCAGTTATTTTAACAGGCTATGCCCTGGGTCACCCTTATCCCTCCTGTGCCTTTCTACCCTTATTATTCTGAAGCAAATCTAAGTAGATATGTTTGTTTTTTCTTAACTTCTTGATACAGTCACACGTTATGTTCTTGTTATTTTTCAAGTAAATGACAGTGGGGTGACAGAGAGCTTGCCTTAGAGCTGGCCCTGCAGTCGTTCAGTGGTTTTTTGTTTTTGTTTTTGTTTTGTTTTTTTGTATTATTATAGTATCTGCAGGTTGAACAAGTTTCTCTTTTCTGCTTGGTTATTTTCTCATTTTACCTAGCCTATAATTATGTGTGGCGTGAGTGGCATTTATTTATTCTGCTGTAGAAGGTAGGCTGGGTAGAGCATTCTTCCAGGCGTGCCCTTAGAATAATGAGAGCTAACCCATCTCCATTAGCATCAGTCTTCAAAGGAGTCCCCTTGGCAGGCTCTTTCTTCAGCAGTGCAGACTCTCACACAGCATTTTAGAACTCCTCTTTTGTAATTGCTTTCAGAAATACTTGCAGTCACCCAGGAAACTGAGTCTCATTTACTTTGATCAAAACCAACCATTATCTAGCCAAAACAGTGCATTTAATCACCCATTCAAATTCTTGGACTTAACTACTCTGAGTAACAAACTCATTACTAAAAAAATTAAATCTACCAGCAAGCAGTTTTGACTACCAATGAACAGGACCTTAAAAAAATCCTAGAGGTACAGACTCTTTTAAAAAACAGTTCTCTGACTGCTGGGGCCAGAAGCCCTTAAGCTGAGGCAGGTCCACTAGGTTAGGGAAGAGATCAGCCCCTGAGTCAGAGAGGATGCTGAGCAAACAGGCTTTGTACAACCGTGTTCATTGCCTCAGAAAACTGACTTGCGCTACCAAAGGAGCTCTGCCTCAGGTCGTCCGGGAGATGTGGCACGGATCAGGAAGCCAGCCTCTACACGGGTGCTGTACAGTGGGCAGTGAGCTTGTCCAGGCCGACACATTGTGCAAGTGCTCTCTCAACTGCTCTTTCTTTACATCCAGTCTGTCACACAATATCTCGGGGAGCATGTGCCAGTGGCTCCCGTTCACCCGGCCTCCAAACCTGAAGAGACTCCAAGACCAATGGGGTGTTGTTTTGTTTTAATCCACACTAGTCATGGAAGTATTAAAGAGAGAAAAATACACCTTTCTCCTGGGACTGAGATTTTTATCATTTTAAAAACTGAATCATTTGAATAGAAAGATGAGTTCTCCCAGAGCTGCGACTCAGCTTCTCTGTGATAATTGCCATAAGGTAATTATTATGCAGCTTTATGTGTTCAAATGTATCCTCAGCTGAAGGACTTTCTGGCCCCAGCAGTCAGATCACTGCTTTGTTAAAAGCCAAGCATCAGTCCAGACCTTATAGGACAATGATTAGCCGTGTTTCTATGGTTTTGTACCATTTAGCCTGGCAGATCACCTATACCAGCAGTAATCTCCCTGTGGCTGGAGAGCTCTTGCCCTGTGGTCCCCCATGGGTTTCGTTCCTTGGACCAACTTAAGGGAAGAATGCCAAGAAGTCTCCTTTCAAACCCTATTCCATTTGGAAAGGTTTATGAGCCAGAGAAAACTGGGCTGGAGCAGAGGCGTGAAGGGAGGACCTGCCACCTAGTGGTCCAAGTTCTGAAACACACTCCTGACTTTTGGAAGGCAAAAGAAGCAAGCCACTTTGTGGAAAATGCCAGTAGGAGATCGAGGGATGTAAAGAATGAAATGCAGAGAGCCTTGTGAATGTCTCACCGGAGAGTGAATGAGAATGGTTCCAGGCTGCCCAAGAGCAGGGTGTATGACCTTCCGGTCTGCTAAGAAGGAAGAGCTATGGAGTTGGAGGACCGAGGTCACATTATAACATTGTAGCATGTGAGAACTAAAAGTAACCGCCCACGGGCTACATCAGTCTTGGATCTAGACTTTACCCCATCCCGAAGCTATGCACTAAGCAAAAACTAATTCTAGAATACAAGAAGAAATCTCATCTCTCCAGGGACCTGAGACAGGAACATACGTGGTCATGGGAGAATGACTGGACTATATTATAGTCAGAAAGGCTGGGGATAGCAGAAATTAGAGGTTAAGCAAGGTCTAAGAGTGACTGGCTAGCCACAGGCCTGTTGTTAGAGGGGCACGAATTTGGAGGACAGTCTGCCTTCCAATCTTTGCCTAGAGGAACCTGCTGTACAGCTCTTCCTGGGGAAAGATAACTAGACTAAGTGGCTCTCAACCTTCGTAATGCTGCATTGATTTTATACAGCTCCTTACATTACGGTGACCCCTCCAACGATAAAATTACTTTTCTTGATTCTTCATAACTGTCATTTTGCCACTGTGTAAATATCTGATATTCAGGCTATCTAATACGTGGCCCCTGTGAAAGGGCTGTTGGACCTCTCAAAGGGTCACAACCCACATGTTAATCACTACTGCACTAGACTATGTGTTGAGTTTGGAGATGGAACTGAAAAGAACATAGGTCCCTTCCAGTCTGACCTGAATTAAGGAATAGATCAGTTATTGGAATGGATTGAGAGTAATCACTCATCACTAGCAGTGGGTGAGTTAGGCCTATACAAGTGAACCAACTTTGCTTTGTTTTTCCCTTTAG
Seq C2 exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-Atp8a1:NM_001038999:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(23.4=100)
A:
NA
C2:
PF127102=HAD=PD(34.4=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: