GgaINT1030967 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr4:67793789-67796331:+
Coord C1 exon
chr4:67793789-67793833
Coord A exon
chr4:67793834-67796258
Coord C2 exon
chr4:67796259-67796331
Length
2425 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTTTACCAAATTACTTCTAGGCA
3' ss Score
7.08
Exon sequences
Seq C1 exon
CCATTGCCCTGAACCTGAGGACTATAGTGTTCCTTCAGATGATTG
Seq A exon
GTAAGCTCTCAGAATCAAATAGTATGTGGTATTTGTTAAAGATTGAAACTTAGAAACAGTGAGATTTTTTCAGAAAGATAGCTAATTGCGAAATATTTTATTCAAAAGTCATTTTATCTTCAAGTTGATGCAGCCCAAACAAGTCTTATGCGAATTTATGCCATCAGAATTCTGTGGCATTAGGATCTGTACTCCGGAATAGAATTGATAACAGGATCACTGAGGTATCCTACTGGTAATCCTGTACAAATCTAAATCGTGTACTGAAGAAAGTTTTGTCTTTTATAAAGGTACTTGGTATTATGGTAACTTTGGTCACACTTTTCTCCTGTTATCCAGTAACAGTTTAGTAATAATCCCTAACATGTTTGAAAAATAATGTTTGAGAGTAAAAAATACATAAGTTAGTGTTAATATTTTGCCTCCTGCAAATGGTTTTAGAGAATTACCATTATTTATTTCTTTACTGAAACTGAGATAACAGTTTCATTTGAGGAGACAGTCTCTTAACAGGGGTCCTCAGGAAAGGCTGAGTCCTGACTTCCTTTCTGTTGCCTTCTGCATGATGCCTTACACTTCCTTCGTTGTTCTTTCTTAAACTAAATATTTACAGTCTTTTTCAAAATAAACTGAAGTAAATCAGGGACAAAAGTCACTTACAATCTTTAAACTATTGTTATTGTACTTCTTGAAAGTCACGGCAAGAGATGTCACACAAAACTGTGTAATATGTTATCGTCTTACATTTAAAAAGTTTTGCAGATTAGAATTAATGTTATTTCTTAAAATTGAGAAAAAAAAAGTAAAACTCCACCCACGTTCTTCCAAAAAGATGCATATATCTTACTTGACCTGAATATCTGTATTTGTTATAGCAACTTGTTTACTAAAAGTATGTACTGCTATGCTTAATGTGTGCGAATGAGAGGTTCCATTAATGCAGTGCTTAAATGAAATAAAGCATGCCTGTGAAATAAGTGTTTTTGACTAATATGCATCAGAAGTTCTATAACCACATCTGAAATGGCAAAATGAGTGAAATAATGCCTGAATAGTAGTTAAAAAAAAAAAAGCAGTACTTTATAAGCTATGAGTGATGTGTAAACATTCACAAATACTCAGGAAAGTTATTTTTTATGTGCAAGTCTGTTGTAATTAAAAAAATCTGCTTGACTAATATTTCTATACTTAAATAATGTACCAAATTCCAAAGCTTTTAAATATATATTGTTTAATTATAAATATTTTCTGTCTAACTGGAAAGCAGTTATGCCTACAAGTATTTTTCAGATTTAGTATTGAGAATCTGAAAAATAGCCTGAAGTCTTTGTCTAAAAATTTTAAGCAAGCAAAGCTTGAAATCTGTAAATAAATTGAATGTGTATGAGACTGCTAACATTTTGCACAGCTGCTTTGCATTTAAAATAAATAAATATAAATCTTGGTGATTGAGGATGCTTTGAATTTCTCACTTCATAACAGGCTTTTGGAAAAAGCTGTCCTTGAGTAGTTATACAGAATGCTGTCATTTTGTATTCCTTCATAGGGTAATTCAGGAGTATAACAACTCACTCCTTTGGTTTCCATAAAAGGCCTTTAGACTGCCTTTGAGACAAATGTGGCTTATCCTTCGACATAAATCACTGCAGGGCAAAATCCAAAGTAAATGAAAATAATATTTTCCTCTGAGTGGGTTCACTTTTCAGAACTGTTCTGTGTCCCTGAGATTCAAACTCAGCTGGTTTGTCTTGATACCCAGCAATCAGTTGACATAACAGGTCTTTCTAGAAGTAGCTACTTCAGGCAGAAGACCTCGGTAATGTGAAAGTTAGTGTAAGACTGTTTCTCAAGGACTATCACCACCTAGTGTCTCTTCAATCCTTTGCTACTTCATCCTTACTTCTCTGTCTTCAGTTTAGGTTATTTTGGTCACGAGTAATGGGAAACAAACAGAATGTTTGTTCCATAATGTCTGAATTTGGTTTGCTTACTCCTTCAGGTACCTGACTTTCTTTTCTGCAAACATATTGCAAACCTATGTCAAAGCTGTTAATTTCTTAAGAAATTTAAGTTCTTCCACGTTCATGTTGTTCTGAGTCCCTCCAATAATTTCTTTCTGTGGAGATCAGATAACAAGAAGCCACTTGTGAGTTGAAGACTTTATTCTGCGTTATCTGAAGTGAGCAGAAAAACATACCTGGATTTGAGTGTATTTATATAAGGTTTATTAAAATTAGATAAACTTTTAATGACCTGTAACAAATTCTTCTCTGGTTCATTTTCACACCATGGGTGACTGCAGCCATTCTTGTAACATCTTAAACCAAAATTTATGTTTGACCTTAGCACAGTAATGTAGATTGTTTGCATACAAACTGTTAAGTATATACTAACGGTGATCTCTCTTTTACCAAATTACTTCTAG
Seq C2 exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]