MmuINT1005002 @ mm10
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67751013-67756694:-
Coord C1 exon
chr5:67756650-67756694
Coord A exon
chr5:67751086-67756649
Coord C2 exon
chr5:67751013-67751085
Length
5564 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGCTTTGTTTTTCCCTTTAGGCA
3' ss Score
11.73
Exon sequences
Seq C1 exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
Seq A exon
GTAAGCTACGTGGTACTTCCACTGCTCTCTTTGAAAGCTTCTGATGTATTGCTTTGTAAACAGGCTTTTCTGGTCTCTGGGAGCCATCTTCACAGGTGTTGGGTGATGATGCTCTGTACTGGGTATTAAACTCAGAGTATCCTTGATTTTTCTATCGAAAGCCCTTGTAAACATATTCTAAAGCTTTAAAGGTTGCTGGAGTCTTATATTATTTATCTATAAGGCGGTAGGGATCGATTCCAAAGTGCCTGGGCAGGAAAATCTGCTGCTGCAGCAATTAAAGCTTGCTTATGGTTTTTTTTTTAGCTCAGCACTGCCCCCTTCTGCCACTGTGCGGATAACGCGCCCATGGACCAGATAATGCAGCTACAGGCCCAAGTGGTACAAGTTTCCTTTTAACATTGTTCATTATTTCTATGTCTCTTCAGAGGCTATAAAATGAAGACCTTTAAATGTAAGGCCAAAGTGTTCTAGAACTAGACTTCCTGCAACCTATCAGTAAATGTACATTCATCATAGATTTATTAAAAATAGCATAGTATAAATTTAATTTCACTCCTATGGGAAGCTTTTTGCTTTTGTTTTGTTTTACATTAAAATTCTTTCAGCCATGTATTTGCATTTTTATCTAGGGGAATTTAGTGTATTTTGTTACTTGTATGATTTGTCATGATCTTGTGGCAAATAAAATTTGAACAATTATAGTTTCTTTAAAGCTAGTGATTTTGAAAAAAAGACTTCTATTTATCTGGACCTCATAGGCTTTATGATTAAGTTATATTTCCACGATCCATTGAACTCCAGTTACAGAATAAGTTTTCAGCCTTCTTGGGATTTATTTCAGTAAAGTGGGGATTTGATATGAGTTTTCAGTAAGCCTCATAGCACCCAGGATTACAGAGGCAGCTGTTTGACTCCTGTGACCGGTGCCACCAACAGTGCTCATTACAAGGAGTCCTACACATTCTGACACCTATCACAGTCATTTGGCTCTTCATACCACTCAGACGAGCATTTTATCATTGCTTGCCTTAGCCTTGCCTACATTCCTACTTATCTGGTCCCGCGACCCTGTAGTTAAAGCTTTTACTGTGGATACTCTTTGACCCAGGTCAGATGTTATCTAAATAAACCCTGCCTCCTTTTTTTTTTTTTAACACCTATGCATCTTTATATGCTGCTTGTCTATAGGACAGTTTGACCCATTTTAATACCATTAAGTACTGTAGAATTGATACACATATCTCTCTTAAGAGACATGACTCCTTTTTCTTAGTCTCGCTGTGGTTTTCTCCAAAGTCTTATATTATTTTCCCAGATCATTTAAAACATTAGACTTTGAGCAGGGGTTGTTTCATGCCACTAACCACTGTTGGAAAAGGGGTTATGTCATTTATCTTGCTCATAAGTTTTTTTTTTTTCATTAAAGTATCTTTTGGGGGGGAATCTAAGTTCAAATGAAATATAACAACTTTTTCATGAATTATGTATTTTCACTCTGCCATTGAGTCTAAAAGTGCACCAGGAAAGACGAGTATCATTTTATGGAAAAGGCACTTTGTTTATTTGTATACTTGGGGGGGGGGGGGGGTCTCTGTCTACACTTGTAGGTTTGCAAAGGTAAAGATGCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTTCTGTGTAGGGTTATGTGGAGTGGCCATGCATGTGAGCTTTGGACTCTGACCATCAATGTTTAGACCCTGACCTGTCCTTCACACAAGTTACTAACTACCTGAGTAGACTTATTGGAAGACTATGACCACCATTAGCCGTTAAATCAGTAGGAAACATTGACAATTAACTAAGCCCTAACTAGAAGGCTAGTGCTGGTGGCACTATAATTCTCAGTCTGCACCATCTATCTGACATGATCATTTTCAAGTTGATAGGTTTTATAGAGAGAAGCCTGTAAGTAGTCTCCCCAAGAACACAACCAGCGGACATGGGTGAGAGCCAGAGGTAATCCTGGCTTAGCCTGATTATGAAAGGTGTGTTAGTGCCGTCACACGTCTGTAGACTTGAAAGACTTGTGTTTCTTTTGGAGCACGGGATAGCTTTGCATTTCAAGCCCTAACTGATTTTATTTCAGTTGAATTGCTGAGGTTGTTAAGGAGAGGCAAATTGAACATCTACCGTTTGACTGAGTTGAGGAACCCTAACTCAGAAGCTCATACAAGACTCCATACTTCCAAGGGCCTCATCTAATTGGTTTTATATTGCTGAGAAAACCAAGATCAACTGTGGCCGTGGTGGAACCCTGTGCTCTGCATATGTGACAGTGGCTCTATGCTACTGCTGCAGGAGGAGAGACTATGGAAGACTCTCTCCAAAACTCTAGAAGTCATCTCAATAGCTGCTTGGCAGCTTTGTCTGGCAATGTGAAGTTGACTGAATGCCACGTAGCAAGCTTGTAGCTGTCTGTTTAATTGTCCTGCTTGAAATGGCACTCACCACAAAAATGTTAAGAAAATCCACATGTGAAAATTATGTGTTTATATTTGGTCCATTCTAAAGACCCTTTCAAATATACTCTTGGCATTAAAGACTGTGCAATAGCTGAAATCCTCTAAAAATGTATTAATATAAGTGATTTGTCTAGATTATGACTTCCCAGTGCATAGCTACTAACTCTAGAATTGGCACTGTTTCCTGTTGTTGCCAAGAACCATAAACAAACGTGGAGACTTGGAGACCAATTCCTTTCTATTAAAAACCATTATCTAAATTGATAGTATCAATATTGGAAGGACTAGAGAGAAAAACATCCATGTAATTATAAGTTATCACATGATTACTTTCAAAAACCCACAAATATTCATAATCATTTTCTCTTAAAAAATTATTTTGGAAAGTTTAAATATAAGCAGAATGAACAAATGTCCCCATCAGTTATTTTAACAGGCTATGCCCTGGGTCACCCTTATCCCTCCTGTGCCTTTCTACCCTTATTATTCTGAAGCAAATCTAAGTAGATATGTTTGTTTTTTCTTAACTTCTTGATACAGTCACACGTTATGTTCTTGTTATTTTTCAAGTAAATGACAGTGGGGTGACAGAGAGCTTGCCTTAGAGCTGGCCCTGCAGTCGTTCAGTGGTTTTTTGTTTTTGTTTTTGTTTTGTTTTTTTGTATTATTATAGTATCTGCAGGTTGAACAAGTTTCTCTTTTCTGCTTGGTTATTTTCTCATTTTACCTAGCCTATAATTATGTGTGGCGTGAGTGGCATTTATTTATTCTGCTGTAGAAGGTAGGCTGGGTAGAGCATTCTTCCAGGCGTGCCCTTAGAATAATGAGAGCTAACCCATCTCCATTAGCATCAGTCTTCAAAGGAGTCCCCTTGGCAGGCTCTTTCTTCAGCAGTGCAGACTCTCACACAGCATTTTAGAACTCCTCTTTTGTAATTGCTTTCAGAAATACTTGCAGTCACCCAGGAAACTGAGTCTCATTTACTTTGATCAAAACCAACCATTATCTAGCCAAAACAGTGCATTTAATCACCCATTCAAATTCTTGGACTTAACTACTCTGAGTAACAAACTCATTACTAAAAAAATTAAATCTACCAGCAAGCAGTTTTGACTACCAATGAACAGGACCTTAAAAAAATCCTAGAGGTACAGACTCTTTTAAAAAACAGTTCTCTGACTGCTGGGGCCAGAAGCCCTTAAGCTGAGGCAGGTCCACTAGGTTAGGGAAGAGATCAGCCCCTGAGTCAGAGAGGATGCTGAGCAAACAGGCTTTGTACAACCGTGTTCATTGCCTCAGAAAACTGACTTGCGCTACCAAAGGAGCTCTGCCTCAGGTCGTCCGGGAGATGTGGCACGGATCAGGAAGCCAGCCTCTACACGGGTGCTGTACAGTGGGCAGTGAGCTTGTCCAGGCCGACACATTGTGCAAGTGCTCTCTCAACTGCTCTTTCTTTACATCCAGTCTGTCACACAATATCTCGGGGAGCATGTGCCAGTGGCTCCCGTTCACCCGGCCTCCAAACCTGAAGAGACTCCAAGACCAATGGGGTGTTGTTTTGTTTTAATCCACACTAGTCATGGAAGTATTAAAGAGAGAAAAATACACCTTTCTCCTGGGACTGAGATTTTTATCATTTTAAAAACTGAATCATTTGAATAGAAAGATGAGTTCTCCCAGAGCTGCGACTCAGCTTCTCTGTGATAATTGCCATAAGGTAATTATTATGCAGCTTTATGTGTTCAAATGTATCCTCAGCTGAAGGACTTTCTGGCCCCAGCAGTCAGATCACTGCTTTGTTAAAAGCCAAGCATCAGTCCAGACCTTATAGGACAATGATTAGCCGTGTTTCTATGGTTTTGTACCATTTAGCCTGGCAGATCACCTATACCAGCAGTAATCTCCCTGTGGCTGGAGAGCTCTTGCCCTGTGGTCCCCCATGGGTTTCGTTCCTTGGACCAACTTAAGGGAAGAATGCCAAGAAGTCTCCTTTCAAACCCTATTCCATTTGGAAAGGTTTATGAGCCAGAGAAAACTGGGCTGGAGCAGAGGCGTGAAGGGAGGACCTGCCACCTAGTGGTCCAAGTTCTGAAACACACTCCTGACTTTTGGAAGGCAAAAGAAGCAAGCCACTTTGTGGAAAATGCCAGTAGGAGATCGAGGGATGTAAAGAATGAAATGCAGAGAGCCTTGTGAATGTCTCACCGGAGAGTGAATGAGAATGGTTCCAGGCTGCCCAAGAGCAGGGTGTATGACCTTCCGGTCTGCTAAGAAGGAAGAGCTATGGAGTTGGAGGACCGAGGTCACATTATAACATTGTAGCATGTGAGAACTAAAAGTAACCGCCCACGGGCTACATCAGTCTTGGATCTAGACTTTACCCCATCCCGAAGCTATGCACTAAGCAAAAACTAATTCTAGAATACAAGAAGAAATCTCATCTCTCCAGGGACCTGAGACAGGAACATACGTGGTCATGGGAGAATGACTGGACTATATTATAGTCAGAAAGGCTGGGGATAGCAGAAATTAGAGGTTAAGCAAGGTCTAAGAGTGACTGGCTAGCCACAGGCCTGTTGTTAGAGGGGCACGAATTTGGAGGACAGTCTGCCTTCCAATCTTTGCCTAGAGGAACCTGCTGTACAGCTCTTCCTGGGGAAAGATAACTAGACTAAGTGGCTCTCAACCTTCGTAATGCTGCATTGATTTTATACAGCTCCTTACATTACGGTGACCCCTCCAACGATAAAATTACTTTTCTTGATTCTTCATAACTGTCATTTTGCCACTGTGTAAATATCTGATATTCAGGCTATCTAATACGTGGCCCCTGTGAAAGGGCTGTTGGACCTCTCAAAGGGTCACAACCCACATGTTAATCACTACTGCACTAGACTATGTGTTGAGTTTGGAGATGGAACTGAAAAGAACATAGGTCCCTTCCAGTCTGACCTGAATTAAGGAATAGATCAGTTATTGGAATGGATTGAGAGTAATCACTCATCACTAGCAGTGGGTGAGTTAGGCCTATACAAGTGAACCAACTTTGCTTTGTTTTTCCCTTTAG
Seq C2 exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685:ENSMUST00000037380:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(3.7=100)
A:
NA
C2:
PF127102=HAD=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types