GgaEX0020984 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67792312-67796331:+
Coord C1 exon
chr4:67792312-67792400
Coord A exon
chr4:67793789-67793833
Coord C2 exon
chr4:67796259-67796331
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGCTTCATGTGCAGCCA
3' ss Score
8.35
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTCAAATACATATTTTCTGATAAAACGGGTACTCTGACATGCAACGTCATGCAGTTTAAAAAATGTACTGTGGCAGGAGTTGCTTATGG
Seq A exon
CCATTGCCCTGAACCTGAGGACTATAGTGTTCCTTCAGATGATTG
Seq C2 exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.375 C2=0.240
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.4=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGTACTCTGACATGCAAC
R:
ATTTTGAAGATTCTCCAGTAGGGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]