HsaEX0007057 @ hg19
Exon Skipping
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42557985-42576724:-
Coord C1 exon
chr4:42576636-42576724
Coord A exon
chr4:42571178-42571222
Coord C2 exon
chr4:42557985-42558057
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTTGCTTTCTGAAGCCA
3' ss Score
6.47
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGTACTCTGACATGCAATGTAATGCAGTTTAAGAAGTGCACCATAGCGGGAGTTGCTTATGG
Seq A exon
CCATGTCCCTGAACCTGAGGATTATGGCTGCTCTCCTGATGAATG
Seq C2 exon
GCAGAACTCACAGTTTGGAGATGAAAAAACATTTAGTGATTCATCATTGCTGGAAAATCTCCAAAATAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.312 C2=0.136
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(6.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACTGGTACTCTGACATGCA
R:
GGAGATTTTCCAGCAATGATGAA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)