BtaEX0005028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63033330-63048135:-
Coord C1 exon
chr6:63048047-63048135
Coord A exon
chr6:63042082-63042126
Coord C2 exon
chr6:63033330-63033402
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTTGCTTTCTGAAGCCA
3' ss Score
6.6
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAAATATATATTTTCTGACAAAACTGGTACTTTGACATGCAATGTAATGCAGTTTAAGAAGTGCACCATAGCCGGAGTGGCTTACGG
Seq A exon
CCATGTCCCTGAACCTGAGGATTATGGCTGCTCTCCTGATGAATG
Seq C2 exon
GCAGAACTCACAGTTTGGAGATGAAAAAACATTTAGTGATTCATCATTGCTGGAAAACCTCCAAAATAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.312 C2=0.100
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(6.2=100)
Main Inclusion Isoform:
ENSBTAT00000014818fB903
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACTGGTACTTTGACATGCA
R:
GGAGGTTTTCCAGCAATGATGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development