RnoEX0013426 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42059132-42079344:+
Coord C1 exon
chr14:42059132-42059220
Coord A exon
chr14:42063998-42064042
Coord C2 exon
chr14:42079272-42079344
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCCTCCTCCTGAAGCCA
3' ss Score
6.65
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCCGACAAAACCGGGACCCTGACGTGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCTTACGG
Seq A exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
Seq C2 exon
GCAGAGCTCACAGTTTGGAGATGAGAAAACCTTTAATGATCCGTCGTTGCTGGAAAATCTTCAGAATAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.144
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(6.2=100)
Main Inclusion Isoform:
ENSRNOT00000044017fB1768
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCGACAAAACCGGGACC
R:
TTTTCCAGCAACGACGGATCA
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]