GgaEX0020984 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70084392-70088411:+
Coord C1 exon
chr4:70084392-70084480
Coord A exon
chr4:70085869-70085913
Coord C2 exon
chr4:70088339-70088411
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGCTTCATGTGCAGCCA
3' ss Score
8.35
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTCAAATACATATTTTCTGATAAAACGGGTACTCTGACATGCAACGTCATGCAGTTTAAAAAATGTACTGTGGCAGGAGTTGCTTATGG
Seq A exon
CCATTGCCCTGAACCTGAGGACTATAGTGTTCCTTCAGATGATTG
Seq C2 exon
GCAGGGCTCACAAAATGGAGACGAAAAAATGTTTAGTGACTCATCCCTACTGGAGAATCTTCAAAATAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.375 C2=0.080
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.7=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(6.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGTACTCTGACATGCAAC
R:
ATTTTGAAGATTCTCCAGTAGGGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event