MmuEX0006937 @ mm10
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67751013-67761202:-
Coord C1 exon
chr5:67761114-67761202
Coord A exon
chr5:67756650-67756694
Coord C2 exon
chr5:67751013-67751085
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCCTCCTCCTGAAGCCA
3' ss Score
6.43
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGG
Seq A exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
Seq C2 exon
GCAGAGCTCACAGTTTGGAGATGAAAAAACCTTTAATGACCCGTCGTTGCTGGACAATCTCCAGAATAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.193
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.4=86.7)
A:
PF127102=HAD=FE(3.7=100)
C2:
PF127102=HAD=FE(5.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAACTGGGACCCTGACA
R:
GAGATTGTCCAGCAACGACGG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types