MmuINT0023106 @ mm10
Intron Retention
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:29850942-29853648:-
Coord C1 exon
chr7:29853497-29853648
Coord A exon
chr7:29851018-29853496
Coord C2 exon
chr7:29850942-29851017
Length
2479 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TCATGGTTCTTTCCCTCTAGCTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
CGCGGTGGACCCTAGGCTTGCTTTATCAGACACACCAGGAAGCCAGTTAGAAGCCGTCTGCATGCCTGCTTGCTGGCTGGGAGCGCACGAAGCTGTGGAGGAGGACAACTGAGGAGCGTGGAGCGTTCCCGAACCCCAAAGAGAATCCCAAT
Seq A exon
GTAAGACCTGAGTGTTTGAGACCAAACCATCCCTGGGCAGTCTGATGAGAGGAAGCCGCCTGCCTAGTCCCGTGGGTACCAGTGAGCAATGGAAAATCCTAGTGTGTGATACCCTGATGAGACCTGGTGTGTGGAAGGGAAGTGAATTGAGAGAAACTAGGCGCGGATAAGACAGATGGATTAATGGGGAGGCACCAAAGTGCTGGGTAGCCTAATGAAGGTGAGGTTAACACTGTAGCGTGTTTGATTTGTGCATGTGATGACCCCTGAATGTGGATCACCTGGGTGGCAGGGAGTGGGGACAGTCTGAACCCTCTAAATCTCATTTCCACCTCAAATCGTGATTAATACCTGAAAAGTCTTGGGTTCACGGCCGATTATTGTCCTTTTGCTTCAGTGAGTAGAGGCGATCTCAACTCCAGAAAGATGGCATGGCGGGGGCTTGAAGAAAGGAGAGGTTTCGTGCGGAAGGTTGCTGTGCAGATCATAGAAACACCTGTAAACAGTCTGTTTTGCTTTCAAGGGTTGTAGGCAGCAGGGTAGGAAGCAGGGAGGGTCTTACCTTTCTGGGAAGGAATGTGTGCCTTTGAGGATGGGGAAAGAGGGAAGTGGAAGGGGACCCTTTCGTGTATATCCATCACGCTGGAGGTGTTGGTACTGGTAGATACAGTTAGTTTAGATTTCTTTCTTTTTCTTTCTTCTTTGTCCCCCCCCCCCCCCCCCGCTCCTCCTCCTCCATTTTGAGACAGGCTCTCACTATGTACCCCTGGCTTTCCTGGAATTCACTAAGTAGACCAGGCTGGCCCCGAAAGCACAGAACTATGCCTTCTTCCACCTCCCCATTACTAGAATTCAAGGTGTTCAGTTTTGAGATGGTACTTGAGTTAAAATTTAGGGCCTCAACTGTTTTTTTACAGATAGTTGGCCACATTCCTAATCTAACATAAACAAGAAGAGATGAGAGTAGGTAGAAGAAACGTAAAGAAGGTTCTGGCTTGGAGATGGCTGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGCAGCAGCAGACCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGATCTAGAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGACAAACCCTGTAGTGAGAATTCTGGAAGTTTGGGTTCTCAAAAAACACAGAAATATAAGAATATGCTTTCATTTTAATCCCAGCTGTGGGGATATGCTGATTTGCCTCATGCTCGAGCAGAGGAATGGTTTTACCAGTTGGAGACAGATTCTGTAATTGTGTGCTGTTTGGAATTCTGGGAATTTTTCAGAGGGTAAATGCTAAAGCCCCATAGGTGGGTGGTTTTTGGTCCTTCCTCCCTGCGCTACCCTTCCCCCCCCCCCCCCCCGTTGGTTGCAGTTTGTTACTCATGCTCCAGGGCTAGCAGACTGAGGTAGCAGTTAAGCTTAGAGAAGCTAAGCTGAGACAGAGAAGATATTGTTAGGAGACAGATAAAACAAGAACCCACAAACAAAGTAATTAAAAATAAAAGAAAAAAATTAAACGTTTACAAAAAGCTACGCCACCACATCAGCTGTCTCAGTAAATAGCTGGTGAGTCTGGTGAGGGCGTAGTTAGGCTTCAAACGCGTCGAGTTGTGTGGTGTGCCTTCTGTTGTATGCTGTGAATGAAAAGGACTCTGTAGGTATCAGACTGTTGTTGGCCATGACGAGGATAGAAGGCACTGGTTATCGATGTGCATGGGAGAGCCCTGGGCAGGTGCAGTGGGCTTTCAGCTGGGAGATGACCATCGGGTATCTAATTCAGGAATGGGGCAGTTAGAGGGGACATTTACGGAAAGACAGAGTGATCCTATTTCATACGCTGGTCTTTGTGGTGGTTTGGGTATAACTAATTTAATCCCAATTATCTCTCTTTAGTTGAGCAACTTTGGCTTTGTAAGGGAGTAGAATTCCCTCAGAGCCCCTAAGCTCTTTCTCCAAGGAAGGAAACAGCCCTTCACATATTTCCATTTGGAAGCTCCGTGGAGGTGTGGATGACAATGGCCCCCATAGGCTCATATGTTTGAATGTTTGGTCCCCAGTTAGTAGAACAATTTGGGAAGGATTAGGAGGTGTGGCCTTGTTGGAATAGGTGTGTCACTGCGGATGGGTTTTGAGGTTTCAGAAGCCCATACCGGTCCCAGTGTCTGTCTGTCTCTTTGCCTGCTGCCTACTGCCTGTGGGTTAGGATGTAAAGCTCTCAACTAGTGCTCCAGCACCATGCCTGCCTGCTTCCTGCCATCATGATCGTGGACTAACCCTCTAAAACTGAAGTAAGGCCCCAGTTAAATACTTCTTTTAAAAGAGTTGCCTTGGTCTTTCTTGGTCATGGTGTCCATTCACAGAAGTAGAACAGCAACTGAGACAAACTTCAAAGAAGCCTTAACCTTTCATGGTTCTTTCCCTCTAG
Seq C2 exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855:ENSMUST00000085792:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types