MmuINT0023106 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:30635961-30638667:-
Coord C1 exon
chr7:30638516-30638667
Coord A exon
chr7:30636037-30638515
Coord C2 exon
chr7:30635961-30636036
Length
2479 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TCATGGTTCTTTCCCTCTAGCTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
CGCGGTGGACCCTAGGCTTGCTTTATCAGACACACCAGGAAGCCAGTTAGAAGCCGTCTGCATGCCTGCTTGCTGGCTGGGAGCGCACGAAGCTGTGGAGGAGGACAACTGAGGAGCGTGGAGCGTTCCCGAACCCCAAAGAGAATCCCAAT
Seq A exon
GTAAGACCTGAGTGTTTGAGACCAAACCATCCCTGGGCAGTCTGATGAGAGGAAGCCGCCTGCCTAGTCCCGTGGGTACCAGTGAGCAATGGAAAATCCTAGTGTGTGATACCCTGATGAGACCTGGTGTGTGGAAGGGAAGTGAATTGAGAGAAACTAGGCGCGGATAAGACAGATGGATTAATGGGGAGGCACCAAAGTGCTGGGTAGCCTAATGAAGGTGAGGTTAACACTGTAGCGTGTTTGATTTGTGCATGTGATGACCCCTGAATGTGGATCACCTGGGTGGCAGGGAGTGGGGACAGTCTGAACCCTCTAAATCTCATTTCCACCTCAAATCGTGATTAATACCTGAAAAGTCTTGGGTTCACGGCCGATTATTGTCCTTTTGCTTCAGTGAGTAGAGGCGATCTCAACTCCAGAAAGATGGCATGGCGGGGGCTTGAAGAAAGGAGAGGTTTCGTGCGGAAGGTTGCTGTGCAGATCATAGAAACACCTGTAAACAGTCTGTTTTGCTTTCAAGGGTTGTAGGCAGCAGGGTAGGAAGCAGGGAGGGTCTTACCTTTCTGGGAAGGAATGTGTGCCTTTGAGGATGGGGAAAGAGGGAAGTGGAAGGGGACCCTTTCGTGTATATCCATCACGCTGGAGGTGTTGGTACTGGTAGATACAGTTAGTTTAGATTTCTTTCTTTTTCTTTCTTCTTTGTCCCCCCCCCCCCCCCCCGCTCCTCCTCCTCCATTTTGAGACAGGCTCTCACTATGTACCCCTGGCTTTCCTGGAATTCACTAAGTAGACCAGGCTGGCCCCGAAAGCACAGAACTATGCCTTCTTCCACCTCCCCATTACTAGAATTCAAGGTGTTCAGTTTTGAGATGGTACTTGAGTTAAAATTTAGGGCCTCAACTGTTTTTTTACAGATAGTTGGCCACATTCCTAATCTAACATAAACAAGAAGAGATGAGAGTAGGTAGAAGAAACGTAAAGAAGGTTCTGGCTTGGAGATGGCTGTGGAGGAGGAGGAAGAGGAGGAGGAGGAGCAGCAGCAGACCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGATCTAGAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGACAAACCCTGTAGTGAGAATTCTGGAAGTTTGGGTTCTCAAAAAACACAGAAATATAAGAATATGCTTTCATTTTAATCCCAGCTGTGGGGATATGCTGATTTGCCTCATGCTCGAGCAGAGGAATGGTTTTACCAGTTGGAGACAGATTCTGTAATTGTGTGCTGTTTGGAATTCTGGGAATTTTTCAGAGGGTAAATGCTAAAGCCCCATAGGTGGGTGGTTTTTGGTCCTTCCTCCCTGCGCTACCCTTCCCCCCCCCCCCCCCCGTTGGTTGCAGTTTGTTACTCATGCTCCAGGGCTAGCAGACTGAGGTAGCAGTTAAGCTTAGAGAAGCTAAGCTGAGACAGAGAAGATATTGTTAGGAGACAGATAAAACAAGAACCCACAAACAAAGTAATTAAAAATAAAAGAAAAAAATTAAACGTTTACAAAAAGCTACGCCACCACATCAGCTGTCTCAGTAAATAGCTGGTGAGTCTGGTGAGGGCGTAGTTAGGCTTCAAACGCGTCGAGTTGTGTGGTGTGCCTTCTGTTGTATGCTGTGAATGAAAAGGACTCTGTAGGTATCAGACTGTTGTTGGCCATGACGAGGATAGAAGGCACTGGTTATCGATGTGCATGGGAGAGCCCTGGGCAGGTGCAGTGGGCTTTCAGCTGGGAGATGACCATCGGGTATCTAATTCAGGAATGGGGCAGTTAGAGGGGACATTTACGGAAAGACAGAGTGATCCTATTTCATACGCTGGTCTTTGTGGTGGTTTGGGTATAACTAATTTAATCCCAATTATCTCTCTTTAGTTGAGCAACTTTGGCTTTGTAAGGGAGTAGAATTCCCTCAGAGCCCCTAAGCTCTTTCTCCAAGGAAGGAAACAGCCCTTCACATATTTCCATTTGGAAGCTCCGTGGAGGTGTGGATGACAATGGCCCCCATAGGCTCATATGTTTGAATGTTTGGTCCCCAGTTAGTAGAACAATTTGGGAAGGATTAGGAGGTGTGGCCTTGTTGGAATAGGTGTGTCACTGCGGATGGGTTTTGAGGTTTCAGAAGCCCATACCGGTCCCAGTGTCTGTCTGTCTCTTTGCCTGCTGCCTACTGCCTGTGGGTTAGGATGTAAAGCTCTCAACTAGTGCTCCAGCACCATGCCTGCCTGCTTCCTGCCATCATGATCGTGGACTAACCCTCTAAAACTGAAGTAAGGCCCCAGTTAAATACTTCTTTTAAAAGAGTTGCCTTGGTCTTTCTTGGTCATGGTGTCCATTCACAGAAGTAGAACAGCAACTGAGACAAACTTCAAAGAAGCCTTAACCTTTCATGGTTCTTTCCCTCTAG
Seq C2 exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
-BC027344:NM_173738:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: