MmuINT0024126 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127562325-127562701:+
Coord C1 exon
chr10:127562325-127562457
Coord A exon
chr10:127562458-127562554
Coord C2 exon
chr10:127562555-127562701
Length
97 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCCTTTTCACGATGGTCCAGACC
3' ss Score
4.9
Exon sequences
Seq C1 exon
ATCCTATGAGATCACCCCTCGTGTCCGAGTTTGGCGGCAGACACTTGAAAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCATGGGCCAGCTAGAAAGGTCCATCGCGTGGGAGAAGTCTGTCAACAAAGTG
Seq A exon
GTAAGTCTGGAAATACTTGGGAGACAAACTAGTGAGAGTGGGGTCGCGATAGCAGGGTTAGGTTAAGGACTCACTCTGCCTTTTCACGATGGTCCAG
Seq C2 exon
ACCTGCCTGGTCTGCCGGAAGGGCGATAATGATGAGTTTCTCCTGCTGTGTGATGGGTGTGACCGAGGCTGCCACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTCTGTGCTGTCTGTCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACTTGAAAGGTGCCGT
R:
ACAGTAAATGTGGCAGCCTCG
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: