HsaINT0016807 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56599702-56600096:-
Coord C1 exon
chr12:56599964-56600096
Coord A exon
chr12:56599849-56599963
Coord C2 exon
chr12:56599702-56599848
Length
115 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TCCTCACAACCTTGGTCCAGACA
3' ss Score
3.17
Exon sequences
Seq C1 exon
ATCATATGAGATCACCCCTCGCATTCGTGTCTGGCGCCAGACCCTCGAGCGGTGCCGGAGCGCAGCCCAGGTGTGCTTGTGCCTGGGCCAGCTGGAGAGGTCCATTGCCTGGGAGAAGTCTGTCAACAAAGTG
Seq A exon
GTAAGAGGCTGAGAGAGCCTGGAGAGGCTGAGGGGCCAGCCAGCAGGGGCGGGGTGGGGTCACTGGCAGGTAGAGGCTGGAGAGCTCATTCTGCCTCCTCACAACCTTGGTCCAG
Seq C2 exon
ACATGTCTAGTCTGCCGGAAGGGTGACAATGATGAGTTTCTTCTGCTTTGTGATGGGTGTGACCGTGGCTGCCACATTTACTGCCATCGTCCCAAGATGGAGGCTGTCCCAGAAGGAGATTGGTTCTGTACTGTCTGTTTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATATGAGATCACCCCTCGCA
R:
TGGGACAGCCTCCATCTTGG
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development