HsaEX6067198 @ hg38
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56599129-56603418:-
Coord C1 exon
chr12:56603359-56603418
Coord A exon
chr12:56602713-56602857
Coord C2 exon
chr12:56599129-56599358
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTTTCATTGTCTACCCAGCGT
3' ss Score
5.84
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTTGATGCCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTCAGCAAG
Seq A exon
CGTCAGCTTTTCTTTCGCAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCGGTCTCCCTGGGTCAGGACCGCTACAGACGTCGCTACTGGGTATTGCCGTATTTGGCTGGTATCTTTGTAGAAGGAACAGAGGGGAACTTAG
Seq C2 exon
CAGGTGGAGGGAGAATTCACTCAGAAGCCTGGTTTCCCAAAGCGTGGCCAGAAGCGGAAAAGTGGTTATTCGCTGAACTTCTCAGAGGGTGATGGCCGCCGACGCCGGGTACTGTTGAGGGGCCGAGAAAGCCCAGCAGCAGGGCCTCGGTACTCGGAAGAAGGGCTCTCCCCCTCCAAGCGGCGGCGACTCTCTATGCGGAACCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108_MULTIEX1-7/16=6-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGCATCCCAGAGCTAGAGC
R:
TGGTGGTTCCGCATAGAGAGT
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains