BtaEX6022176 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57154597-57156177:+
Coord C1 exon
chr5:57154597-57154656
Coord A exon
chr5:57154854-57154998
Coord C2 exon
chr5:57155525-57156177
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCACTGCCTACCCAGCGT
3' ss Score
5.36
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTTGATATCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTGAGCAAG
Seq A exon
CGTCAGCTCTTCTTTCGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGAGCAGTCTCCTTGGGTCAGGACCGCTACAGACGCCGCTACTGGGTGTTGCCCTACTTGACTGGTATCTTTGTGGAAGGAACAGAGGGAAGCTTAG
Seq C2 exon
TTCCTGAGGATGTGATAAAACAGGAAACTGACTCCTTAAAAGTGGCAACCCATTCAACAACCAGCCCAACCTCCTTCTCTCTGAAGAGGGAGTTAGCTGGCTCCAGCACCTCTGCCAGTTCTCCTGCCCGGGCCCGAGGCCGACCTCGGAAAACTAAGCCTGGCTCTATGCAGCCTAGGCACTTGAAATCTCATTCCAAGGGTCAAGGTTCAGAAGAGCCTCAGACCCAGCTTCAGCCTGAGACTCAGTCCCATCCTCAGCTTCAGGCTCATGCCCAGCCCCAGCTTCAGTCCCATCCTCACACTCATAATGGGTTCCTGGAGCCAGAAGGCTCCCCATTGTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCAGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAACCATGGCTCCCTGCTGAGCAGCTCAGTCCTCACGCCTGATAGCAGTCCCGGAAAACTGGACCCAGCCCCATCACATGCCCCAGAGGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'29-36,'29-34,30-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.061 C2=0.991
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCAGATAGAAAAACTGAGC
R:
CTGGGTCTGAGGCTCTTCTGA
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]