MmuEX6052076 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128122068-128123655:+
Coord C1 exon
chr10:128122068-128122127
Coord A exon
chr10:128122306-128122450
Coord C2 exon
chr10:128123024-128123655
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCATTTCCTACCCAGCGT
3' ss Score
7.39
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTGATGTTGCAGCATCTAGCATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAGTAAG
Seq A exon
CGTCAGCTCTTCTTTAGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTATAGACGCCATTACTGGGTATTACCGTATCTTGCTGGTATCTTTGTGGAAGGATCGGAAGGGAGCACAG
Seq C2 exon
TTACTGAAGATGAAATAAAGCAAGAAACTGAGTCCTTGATGGAAGTAGTCACTTCAACACCCAGCTCTGCCCGAGCCTCTGTAAAGAGAGAATTAACTGGCTCCAATGCCTCTACTTCTCCTGCCCGGTCCCGAGGCCGACCTCGAAAACCTAAGCCTGGGTCTCTGCAGCCTCAGCACCTTCAGTCCACCATTAGGGAATGTGATTCAGAGCAAGCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAGCTTCAGGCCCCTACCCAGCCCCATCTTCAGCCAAGTAGTGGGTTCCTAGAGCCAGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGACAGCAGCCCAGGGAAACTAGACTCTGCTCCGTCTCAGTCCTTGGAGGAGCCCGAGCCTGATGAGGCTCAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'34-52,'34-50,39-52=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.122 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTAGCATTCCAGAGCTAGA
R:
AATGGTGGACTGAAGGTGCTG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types