GgaEX1010588 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38199165-38204173:-
Coord C1 exon
chr7:38204111-38204173
Coord A exon
chr7:38202763-38202907
Coord C2 exon
chr7:38199165-38199829
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTTTTTTAAAACAGCAA
3' ss Score
7.83
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
Seq A exon
CAACAAAGCCAGTACAGAAAGAAGTTATTTGAAGCCTCACATTGTTTGCGTTCAATGATGTTTGGTCAAGATCGTTACAGGCGCCGGTATTGGATTCTGCCCCAGTGTGGTGGCATTTTTGTAGAAGGCATGGAAAGCGGTGAAG
Seq C2 exon
GTTTAGAAGAAATTGCAAAAGAAAAGGAGAAGTTAAAAAAAGTAGAAAGTATACATATCAAAGAAGAGGTATTTGAGATCTCAGAAGAAAAAATAAGCTGTTTAAATACAACTCGCTGTGAGCAAAAGGAAGATCTGAAAGAAAAGGACAACACTAATTTGTTTTTGCAAAAGCCTGGGTCATTTTCAAAACTAAGCAAACTGTTAGAGGTTGCAAAAATGCCACCTGAGTCTGATGTTATGCCCCAAAAACCTAATGGTGGTGCAGCAAATGGATGCACTCCATCTTATCAAAATACTTCCCAAAACTCTCTGTGTAGTCTTCAACCCAGTGTATCACAAAGCAGCAGCGAAAAGTCTGATTCTAGTAATCTTTTCAGTCCTACTGCAAGCGGGACAGGAAAGTTTTATAGTTCTCCATTAATTCCAAGTGATCAGTTATTAAAGACTCTTACTGAGAAGAACAGACAGTGGTTCAGCCTTCTGCCAAGAGTACCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'36-42,'36-40,37-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.082 C2=0.541
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(5.2=100)
A:
PF0334410=Daxx=FE(12.4=100),PF156131=WHIM2=WD(100=59.2)
C2:
PF0334410=Daxx=PD(53.0=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCAGACAGTGAGTGT
R:
TGAAAATGACCCAGGCTTTTGC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]