HsaEX6016162 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160206219-160231264:-
Coord C1 exon
chr2:160231202-160231264
Coord A exon
chr2:160229556-160229700
Coord C2 exon
chr2:160206219-160206868
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTACCATTTTTTTAACAGCAA
3' ss Score
7.4
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GATGAAGGTGACCAAGCAGCAAGTGTTGAAGAGCTGGAAAAACAGATTGAAAAACTGAGTAAA
Seq A exon
CAACAGAGTCAGTACAGAAGGAAGCTCTTTGATGCGTCTCACTCATTGCGTTCAGTGATGTTTGGCCAAGATCGTTACAGACGCCGGTACTGGATTCTTCCCCAATGTGGGGGGATTTTTGTAGAAGGCATGGAGAGTGGTGAAG
Seq C2 exon
GACTAGAAGAAATTGCAAAAGAAAGAGAAAAACTGAAAAAGGCAGAAAGTGTCCAGATCAAAGAAGAAATGTTTGAGACTTCTGGGGACAGTTTAAATTGTTCAAATACAGATCACTGTGAACAAAAGGAAGATCTTAAAGAAAAAGATAACACAAATCTATTCCTTCAGAAACCTGGCTCTTTTTCCAAATTAAGCAAGCTTTTGGAAGTAGCTAAGATGCCTCCTGAGTCAGAGGTTATGACCCCCAAACCAAATGCTGGTGCAAATGGGTGCACGTTGTCTTATCAGAACAGTGGAAAACATTCACTGGGCAGCGTTCAGTCAACAGCAACGCAAAGCAATGTGGAAAAGGCAGACTCTAATAATCTGTTTAATACTGGTTCAAGTGGTCCAGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGTTACTAAAAACGCTGACTGAAAAGAATAGACAATGGTTTAGTCTTTTGCCACGAACACCCTGTGATGACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.286 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=59.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGACCAAGCAGCAAG
R:
AGAGCCAGGTTTCTGAAGGAA
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)