DreEX6020947 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11743603-11746927:+
Coord C1 exon
chr6:11743603-11743665
Coord A exon
chr6:11744430-11744574
Coord C2 exon
chr6:11746170-11746927
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTGTCTGAGTACAGCAA
3' ss Score
1.95
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATGAGGGAGACCCAGCCACTAGTGTTGAAGAGCTGGAGAAACAGATTGAAAAGATATCAAAG
Seq A exon
CAACAAAACCTAATCCGCCGGAAGCTGTTTGAGTCGTCTCACGCCCTGCGGTCCATGTCATATGGACAAGACCGGTTCCGCCGCAGATACTGGATCCTGCCACAGTGTGGAGGAGTTTACATAGAGGCCTTAGAGAGTGGAGAAG
Seq C2 exon
GTCTGGAGGAGCTAGAGAAAGAGCGCGAGAGGTTGAGGAACTGTCCGGTTGTGCAGGTCAAAGAGGAGCCCAAGGAGGAAGTCCTGCAGCATCATCAGCACGAGGAGATACAAGGGACACTGAAAGAGGAGGTCAAACAGGAGGAGGAGAAGCCCATGGATCTGGACCAGGAGCCAAATAAAGAGGCACGCTCCTCCCCTCTAAAAGACAAAACAGATGTTGTGGCCACACCCCCTCAACTACCAGAACTCCGCCTCTCACAGAGCCCTCAGTGTCAGGAGCCACCTCACACGCCACGCCATGCCCACAACGGCTGCTCGGCAACAATCGCCATGGACATGACATCAGGATCGTCTCCAGCTCACTCTCCAACTACCTCCAAGCTGACCGAGGCCAGCAGCCCAAACGCAGAGCACGCAATCCCTCCGCCTCTGCAGCTAGGCATCCCTGCGCACCTCCTGCAGCCGCAGCTGGCGCAGACTCAGCTCCTCGCCAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'37-33,'37-32,38-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.429 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAGCCACTAGTGTTGA
R:
AGCGTGCCTCTTTATTTGGCT
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]