MmuEX6101474 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59913540-59918501:-
Coord C1 exon
chr2:59918439-59918501
Coord A exon
chr2:59917354-59917498
Coord C2 exon
chr2:59913540-59914195
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGGACGGCTTTTCCACAGCAA
3' ss Score
5.41
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGAAGGTGACCAAACAGCCAGCGTTGAGGAGCTAGAAAAACAGATTGAAAAACTGAGCAAA
Seq A exon
CAACAGAGCCAGTACAGACGAAAGCTCTTTGATGCTTCTCACTCACTACGCTCGATGATGTTTGGTCAGGATCGGTACCGACGCAGATACTGGATTCTCCCTCAATGTGGAGGGATTTTTGTAGAAGGCATGGAAAGTGGTGAAG
Seq C2 exon
GCCTAGAAGAAATTGCAAAAGAAAAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGAGACTTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAACACAAATCTATTTCTTCAGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCCCCAAAAGTGAATGTTAGTACAAACGGGGGCCCACTGTCTCATCAGAACAGCGGGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAAAAACACTGACTGAAAAGAACAGACAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'85-81,'85-77,86-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.333 C2=0.658
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(5.2=100)
A:
PF0334410=Daxx=FE(12.4=100)
C2:
PF0334410=Daxx=PD(53.1=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGACCAAACAGCCAG
R:
TGGAGAAAGAGCCTGGTTTCTG
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types