RnoEX6016967 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45983386-45990237:-
Coord C1 exon
chr3:45990175-45990237
Coord A exon
chr3:45989085-45989229
Coord C2 exon
chr3:45983386-45984038
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGGACGGCTTTTTCACAGCAA
3' ss Score
4.31
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGAAGGTGACCAAACAGCCAGTGTTGAGGAGCTCGAAAAGCAGATTGAAAAACTGAGCAAG
Seq A exon
CAACAGAGCCAGTACAGACGGAAGCTCTTTGATGCTTCTCACTCATTACGCTCGATGATGTTTGGCCAGGACCGATACCGACGCAGATACTGGATTCTTCCTCAGTGTGGAGGGATTTTTGTAGAAGGCATGGAAAGCGGTGAAG
Seq C2 exon
GCCTAGAAGAAATTGCAAAAGAAAAAGAAAAGCTTAAAAAGGCCGAGAGTCTCCAGATCAAAGAAGAAGTGTTCGAGACTTCTACAGACACTTTAAACTGTCCCACCAGAGATCACTGTGAGCAGAAGGACGACCTGAAAGAGAAAGATAACACGAATCTATTTCTTCAGAAACCGGGCTCGTTCTCCAAGCTAAGCAAGCTTTTGGAGGTAGCTAAAATGCCTCCCGAGTCAGATGTTATGACTCCCCCAAAAGTGAACGTTAGTACAAATGGGGGCCCACTGTCTCATCAGAACAGCGGGAAGCATGCACTGGGAAGCATTCCCTCAGCAGCGGCACAGAGCCCCGTGGGGAAGACAGACGTCAGTCTGTTCAGCTCGGGCTCTGGTAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAAAAACGCTGACTGAAAAGAACCGGCAGTGGTTTAGCCTTTTGCCAAAAACACCTTGTGATGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'48-53,'48-49,49-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.327 C2=0.592
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=59.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGACCAAACAGCCAGT
R:
CGAGCCCGGTTTCTGAAGAAA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]