DreEX6079017 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6760507-6764127:-
Coord C1 exon
chr23:6764065-6764127
Coord A exon
chr23:6763448-6763592
Coord C2 exon
chr23:6760507-6761129
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTCCGTCTCTCAGCGT
3' ss Score
9.58
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTGAGAGTCCTAATACCTGCAGTGTTGCTGAGCTGGAGCGCCAGATTGATAAACTAACCAAG
Seq A exon
CGTCAGGTGTTTTTCCGCAAGAAGCTGCAGCAGTCGTCTCATTCTATGCGAGCCGTGTCTCTCGGACAGGACCGGTACCGCCGCAGGTACCTCCTGCTTCCATACATGGGATGTATCCTAGTGGAGGGAGCAGAGGATATCTTGG
Seq C2 exon
CGTCAGGTGAAGTGACAGTCACTGATGAACCTGTGACTTACGTGAAGGTCATAACTCCAGCAAAAGCTGAGGTTAAAGCGGAACCTCCACTGTCTCCTGGCTTCTGCACATCGTCTTCTCCTCAAGGGTCTCGGCTTTCCCTCACAGATCTGGATGCTCTTCCTGGCGAGGCGTCTCTGATGAGCACCCCCAGAGGACGGGGGCGTCCACGGAAGATCAAACCGGAGGTTGAGCTTCATCTGCGCACCGCCAAGAACCGCCGGCGCCGCCGCAGCAGCAGATCGGCAGGTGAAGATTCAGGCCTGAGTTCTCCGTTGCAGGATCTCCCTCTACCTGCTCTCCAGGCCTCCGTGAAGCAACCGCAGGATGACGAGGCTGACGCTAGTGCACCGATCGTAGCCTCTGGAGCCGGTCAGGGTGAAGACAACAGCCAGCCGGAGGACAGCATGCGGGAGCAGGCAGAGAAACGAGGCCAGTGGTTCAATCTGTTGCCTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'26-31,'26-28,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.051 C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCGCCAGATTGATAAACT
R:
CTCCGGTTTGATCTTCCGTGG
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]