RnoEX0014170 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2543196-2545161:+
Coord C1 exon
chr7:2543196-2543255
Coord A exon
chr7:2543430-2543574
Coord C2 exon
chr7:2544500-2545161
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCAATTCCTATCCAGCGT
3' ss Score
7.06
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTTGATGTTGCAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAGAAACTCAGTAAG
Seq A exon
CGTCAGCTCTTCTTTAGAAAAAAACTGCTTCACTCGTCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTTTAGACGCCATTACTGGGTCTTACCGTGTCTTGCTGGTATCTTTGTGGAAGGATCAGAGGGGAGTGCAG
Seq C2 exon
TTACTGAAGATGGAATAAAGCAAGAAACCGAGTCCTTGATGGAAGCAGTCACTTCAACGCCCAGCTCTGCCCAAGTCTCTGTAAAGAGGGAGCCAACGGGCTCTACCACCTCTACTTCTCCTGCCCGGTCCCGAGGGCGACCTCGAAAACCTAAGCCAGGGTCTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAGCCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCAGCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAAATTAGACTCTGCTCCATCTCAGTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'25-37,'25-34,26-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.122 C2=0.991
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCAGATAGAGAAACTCAGT
R:
GTGAGCTTGAGACTGGGCTTG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]