MmuEX6052076 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127559124-127560711:+
Coord C1 exon
chr10:127559124-127559183
Coord A exon
chr10:127559362-127559506
Coord C2 exon
chr10:127560080-127560711
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCATTTCCTACCCAGCGT
3' ss Score
7.39
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTGATGTTGCAGCATCTAGCATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAGTAAG
Seq A exon
CGTCAGCTCTTCTTTAGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTATAGACGCCATTACTGGGTATTACCGTATCTTGCTGGTATCTTTGTGGAAGGATCGGAAGGGAGCACAG
Seq C2 exon
TTACTGAAGATGAAATAAAGCAAGAAACTGAGTCCTTGATGGAAGTAGTCACTTCAACACCCAGCTCTGCCCGAGCCTCTGTAAAGAGAGAATTAACTGGCTCCAATGCCTCTACTTCTCCTGCCCGGTCCCGAGGCCGACCTCGAAAACCTAAGCCTGGGTCTCTGCAGCCTCAGCACCTTCAGTCCACCATTAGGGAATGTGATTCAGAGCAAGCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAGCTTCAGGCCCCTACCCAGCCCCATCTTCAGCCAAGTAGTGGGTTCCTAGAGCCAGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGACAGCAGCCCAGGGAAACTAGACTCTGCTCCGTCTCAGTCCTTGGAGGAGCCCGAGCCTGATGAGGCTCAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'31-38,'31-36,32-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.122 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
PF156131=WHIM2=WD(100=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTAGCATTCCAGAGCTAGA
R:
AATGGTGGACTGAAGGTGCTG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: